View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_high_10 (Length: 239)
Name: NF16868_high_10
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_high_10 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 36100968 - 36101188
Alignment:
| Q |
19 |
gcataaagatatttttattagagcgcaacataatgttgttacaattagtggtaaaaagatagtgcaagttagtttcattggtcaatttttgggaacaatt |
118 |
Q |
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| T |
36100968 |
gcataaagatatttttattagagcgcaacataatgttgttacaattagtggtaaaaagatagtgcaagttagtttcattggtcaatttttgggaacaatt |
36101067 |
T |
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| Q |
119 |
gaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccacannnnnnnggt |
218 |
Q |
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| T |
36101068 |
gaaagacttttgccgttgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccacatttttttggt |
36101167 |
T |
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| Q |
219 |
atgatattccaattggcactc |
239 |
Q |
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||||||||||||||||||||| |
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| T |
36101168 |
atgatattccaattggcactc |
36101188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 19 - 207
Target Start/End: Complemental strand, 36090108 - 36089914
Alignment:
| Q |
19 |
gcataaagatatttttattagagcgcaacataatgttgttacaattagtg------gtaaaaagatagtgcaagttagtttcattggtcaatttttggga |
112 |
Q |
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|||||||||| ||||||||||||| ||||||||||||||| |||| ||| || ||||| ||||||||||||||||||||||||||||||| || |
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| T |
36090108 |
gcataaagatctttttattagagctcaacataatgttgttcaaattggtgaacatggtgaaaaggtagtgcaagttagtttcattggtcaatttttaggg |
36090009 |
T |
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| Q |
113 |
acaattgaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccac |
207 |
Q |
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| T |
36090008 |
acaattgaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaagaaaagtgattgttcttcaatgtcttggattaattccac |
36089914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 67 - 207
Target Start/End: Original strand, 21483004 - 21483144
Alignment:
| Q |
67 |
tggtaaaaagatagtgcaagttagtttcattggtcaatttttgggaacaattgaaagacttttacctttgatcaatgagagtttccctgaattaggttta |
166 |
Q |
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|||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||| ||||||||||||||||| || |
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| T |
21483004 |
tggtcaaaagatagtacaagttagtttcattggtcaatttttggggacaattgaaagacttttacctttggtgaatgaaagtttccctgaattagggttg |
21483103 |
T |
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| Q |
167 |
aagaaaaatgattgctcttcaatgccttggattaattccac |
207 |
Q |
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| T |
21483104 |
aaaaaaagtgattgcttttcaatgccttgggttaattccac |
21483144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 36108227 - 36108421
Alignment:
| Q |
19 |
gcataaagatatttttattagagcgcaacataatgttgttacaattagt------ggtaaaaagatagtgcaagttagtttcattggtcaatttttggga |
112 |
Q |
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|||||||||| |||| ||||||||||||| |||||||||| |||| || || |||||| |||||||| |||||||||||||||| |||||||| |
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| T |
36108227 |
gcataaagatcttttcattagagcgcaacctaatgttgttcaaattggtcaagagggaaaaaaggtagtgcaaattagtttcattggtcagtttttgggg |
36108326 |
T |
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| Q |
113 |
acaattgaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccac |
207 |
Q |
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| T |
36108327 |
aaaattgaaagacttttaactttgatgaataaggaattccccgaattaggtttgaacaaaagcgattgcttttcaatgccttggattaattccac |
36108421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 71 - 204
Target Start/End: Complemental strand, 34971360 - 34971227
Alignment:
| Q |
71 |
aaaaagatagtgcaagttagtttcattggtcaatttttgggaacaattgaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaaga |
170 |
Q |
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|||||| |||| ||||||||||| ||||| |||||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||||| || | |
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| T |
34971360 |
aaaaaggtagtacaagttagttttattggccaatttttagggacaattgaaagacttttacctttgatgaacgagagtttccctgaattaggtttgaaaa |
34971261 |
T |
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| Q |
171 |
aaaatgattgctcttcaatgccttggattaattc |
204 |
Q |
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| T |
34971260 |
aaagtgattgtatgtcaatgccttgggttaattc |
34971227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 8338852 - 8339040
Alignment:
| Q |
19 |
gcataaagatatttttattagagcgcaacataatgttgttacaattagtggtaaaaagatagtgcaagttagtttcattggtcaatttttgggaacaatt |
118 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8338852 |
gcataaagatatttttattagagtgcaacataatgttgttaaaattagtggtaaaaagatagtgcaagttagtttcattggtcaatttttgggcacaatt |
8338951 |
T |
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| Q |
119 |
gaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccac |
207 |
Q |
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| T |
8338952 |
gaaaggcttatacctttggtgagtgagagtttccctaaattggctttgaagaaaagtgattgctttttaatgccttgggtaaattccac |
8339040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 6838988 - 6839182
Alignment:
| Q |
19 |
gcataaagatatttttattagagcgcaacataatgttgttacaattagt------ggtaaaaagatagtgcaagttagtttcattggtcaatttttggga |
112 |
Q |
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|||||||||| |||| ||||||| ||||| |||||||||| |||| || || |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6838988 |
gcataaagatcttttcattagagtgcaacctaatgttgttcaaattggtcaggagggaaaaaaggtagtgcaagttagtttcattggtcaatttttggga |
6839087 |
T |
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| Q |
113 |
acaattgaaagacttttacctttgatcaatgagagtttccctgaattaggtttaaagaaaaatgattgctcttcaatgccttggattaattccac |
207 |
Q |
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| T |
6839088 |
aaaattgaaagacttttagttttgttgagtaagaaattccccgaattaggtttgaacaaaagcgattgcttttcaatgccttggattaattccac |
6839182 |
T |
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