View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_high_6 (Length: 291)
Name: NF16868_high_6
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_high_6 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 43263287 - 43263577
Alignment:
| Q |
1 |
caaaggtgttgaagcaggaacagttcctgttctgatagaacttctgttagaaaattgcaaagacagaaaaccaaatgaaatgatgttggttttgttggag |
100 |
Q |
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| T |
43263287 |
caaaggtgttgaagcaggaacagttcctgttctgatagaacttctgttagaaaattgcaaagacagaaaaccaaatgaaatgatgttggttttgttggag |
43263386 |
T |
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| Q |
101 |
aatctttgtcagtgtgctgaaggaagagctgaacttttgagacatgcagcaggtcttgctgttgtttctaagaagattctaagggtttcgacacttgcga |
200 |
Q |
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| T |
43263387 |
aatctttgtcagtgtgctgaaggaagagctgaacttttgagacatgcagcaggtcttgctgttgtttctaagaagattctaagggtttcgacacttgcga |
43263486 |
T |
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| Q |
201 |
atgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgttcaagaaatgcttaaacttggtgttgtggc |
291 |
Q |
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| T |
43263487 |
atgatagggctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgttcaagaaatgcttaaacttggtgttgtggc |
43263577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 288
Target Start/End: Complemental strand, 24890174 - 24890048
Alignment:
| Q |
162 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
261 |
Q |
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||||||| ||||||||| | |||||||| ||| | || |||||||||||||| || ||||| | |||||||||||||| ||||| || | | |||||| |
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| T |
24890174 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaagattttctgctacacattttgttgt |
24890075 |
T |
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| Q |
262 |
tcaagaaatgcttaaacttggtgttgt |
288 |
Q |
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| T |
24890074 |
tcaagaaatgttgagaattggtgttgt |
24890048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 24899793 - 24899919
Alignment:
| Q |
162 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
261 |
Q |
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||||||| ||||||||| | |||||||| ||| | || |||||||||||||| || ||||| | |||||||||||||| ||||| || | | |||||| |
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| T |
24899793 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagtattcttctatctgtttcaagattttctgctacacattttgttgt |
24899892 |
T |
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| Q |
262 |
tcaagaaatgcttaaacttggtgttgt |
288 |
Q |
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| T |
24899893 |
tcaagaaatgttgagaattggtgttgt |
24899919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 288
Target Start/End: Original strand, 24907252 - 24907378
Alignment:
| Q |
162 |
ttgtttctaagaagattctaagggtttcgacacttgcgaatgatagagctgtaaggattctgttgtctgtttcaagattctctgcaactcctaatgttgt |
261 |
Q |
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||||||| ||||||||| | |||||||| ||| | || |||||||||||||| || ||||| | |||||||||||||| ||||| || | | |||||| |
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| T |
24907252 |
ttgtttcaaagaagattttgagggtttcaacaatggctaatgatagagctgtgagaattcttctatctgtttcaagattttctgctacacattttgttgt |
24907351 |
T |
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| Q |
262 |
tcaagaaatgcttaaacttggtgttgt |
288 |
Q |
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| T |
24907352 |
tcaagaaatgttgagaattggtgttgt |
24907378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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