View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_low_1 (Length: 443)
Name: NF16868_low_1
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 112; Significance: 2e-56; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 23 - 199
Target Start/End: Original strand, 26200338 - 26200509
Alignment:
| Q |
23 |
cagcataaaatgaatcagaatccatgttctacacaatggagctattattatcaatacaaggacagaaaaggtgaaatgcaacaatgaatctttattactt |
122 |
Q |
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| T |
26200338 |
cagcataaattgaatcagaatccatgttctacacaatggagttattattatcagtacaaggacagaaaaggtgaaatgcaacaatcaatctttattacct |
26200437 |
T |
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| Q |
123 |
ctcgttttagccaacgcacacacaacaatgaatctttctttctttctccaattgcaaacagaagactgatcaataga |
199 |
Q |
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| T |
26200438 |
ctc-tttttgggaacgctcacacaacaatgaa----tctttctttctccaattgcaaacagaagactgatcgataga |
26200509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 316 - 438
Target Start/End: Original strand, 26200573 - 26200697
Alignment:
| Q |
316 |
gtgctttctttttatacactcaactgaattcttttgactcatgcactcaacgaatttcttttgacaac--atgtagacaacgaatttcttttgattttct |
413 |
Q |
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| T |
26200573 |
gtgctttctttttatacactcaactgaatttttttgactcatgcactcaacgaatttcttttgacaacatatgtagacaacgaatttcttttgattttct |
26200672 |
T |
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| Q |
414 |
tttaacaatgtacaacacctttttc |
438 |
Q |
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| T |
26200673 |
tttaacaatgtacagcacctttttc |
26200697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 26123847 - 26123908
Alignment:
| Q |
144 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcaatagaaacaat |
205 |
Q |
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| T |
26123847 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcgatagaaacaat |
26123908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 144 - 205
Target Start/End: Original strand, 26168364 - 26168425
Alignment:
| Q |
144 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcaatagaaacaat |
205 |
Q |
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| T |
26168364 |
acaacaatgaatctttctttctttctccaattgcaaacagaagactgatcgatagaaacaat |
26168425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 26168422 - 26168475
Alignment:
| Q |
241 |
caatctttgctttagagaagctaactctgaatttaacaaacggtgctttctttt |
294 |
Q |
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| T |
26168422 |
caatctatgctttagagaagcaaactgtgaatttaacaaacggtgctttctttt |
26168475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 26200509 - 26200556
Alignment:
| Q |
254 |
agagaagctaactctgaatttaacaaacggtgctttcttttttatttc |
301 |
Q |
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| T |
26200509 |
agagaagccaattgtgaatttaacaaacggtgctttcttttctatttc |
26200556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 294
Target Start/End: Original strand, 26123905 - 26123959
Alignment:
| Q |
241 |
caatctttgctttagagaa-gctaactctgaatttaacaaacggtgctttctttt |
294 |
Q |
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| T |
26123905 |
caatctatgctttagagaaagccaactgtgaatttaacaaacagtgctttctttt |
26123959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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