View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_low_10 (Length: 240)
Name: NF16868_low_10
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 43263555 - 43263778
Alignment:
| Q |
1 |
atgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagcaagggagatacttaagatgcatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43263555 |
atgcttaaacttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagcaagggagatacttaagatgcatg |
43263654 |
T |
|
| Q |
101 |
ctagggcttggaggaattctccatgcatacctagtaatttgctttcttcataccccaattatgagtgaaattaattagtgtgatttacatatattaattg |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43263655 |
ctagggcatggaggaattctccatgcatacctagtaatttgctttcttcataccccaattatgagtgaaattaattagtgtgatttacatatatcaattg |
43263754 |
T |
|
| Q |
201 |
ggctagctaattaagtagctgctc |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
43263755 |
ggctagctaattaagtagctgctc |
43263778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 155
Target Start/End: Complemental strand, 24890057 - 24889913
Alignment:
| Q |
11 |
ttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagcaagggagatacttaagatgcatgctagggcttg |
110 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| ||||| ||||| | | | |||| |
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| T |
24890057 |
ttggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagcaagggagattcttaaattgcattcaaagtcttg |
24889958 |
T |
|
| Q |
111 |
gaggaattctccatgcatacctagtaatttgctttcttcataccc |
155 |
Q |
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| T |
24889957 |
gatgaattctcattgcataccttttaatttacttgcttcataccc |
24889913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 24899910 - 24900054
Alignment:
| Q |
11 |
ttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagcaagggagatacttaagatgcatgctagggcttg |
110 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| ||||| ||||| | | | |||| |
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| T |
24899910 |
ttggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagcaagggagattcttaaattgcattcaaagtcttg |
24900009 |
T |
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| Q |
111 |
gaggaattctccatgcatacctagtaatttgctttcttcataccc |
155 |
Q |
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|| |||||||| ||||||||| |||||| ||| |||||||||| |
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| T |
24900010 |
gatgaattctcattgcataccttttaatttacttgcttcataccc |
24900054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 24907369 - 24907513
Alignment:
| Q |
11 |
ttggtgttgtggctaagctttgtttggttcttcaagttgattgtggaagtaagactaaggagaaagcaagggagatacttaagatgcatgctagggcttg |
110 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| |||| | |||||||||||||||||||| ||||| ||||| | | | |||| |
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| T |
24907369 |
ttggtgttgttgctaagctttgtttggttcttcaagttgatagtggaaataaggcaaaggagaaagcaagggagattcttaaattgcattcaaagtcttg |
24907468 |
T |
|
| Q |
111 |
gaggaattctccatgcatacctagtaatttgctttcttcataccc |
155 |
Q |
| |
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|| |||||||| ||||||||| |||||| ||| |||||||||| |
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| T |
24907469 |
gatgaattctcattgcataccttttaatttacttgcttcataccc |
24907513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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