View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_low_2 (Length: 425)
Name: NF16868_low_2
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 407
Target Start/End: Original strand, 49726560 - 49726956
Alignment:
| Q |
11 |
catcatcaattacctgtggatttctcggagaaattgaattcccttttacaagcacacaacatccagattgtggcatgttagtaatacatggttgtgaaga |
110 |
Q |
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| T |
49726560 |
catcttcaattacctgtggatttctcggagaaattgaattcccttttacaagcacacaacatccagattgtggcatgttagtaatacatggttgtgaaga |
49726659 |
T |
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| Q |
111 |
ctatgaaccacaatccnnnnnnnnnnnnnnnnnnnnnnnnngatggttcgatattctgaaaatcgaaccattcacaatcacaatcaaagacgaccaactc |
210 |
Q |
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| T |
49726660 |
ctatgaaccacaatccaaaaaaacaatacaaaacaacaaaagatggttcgatattctgaaaatcgaaccattcacaatcacaatcaaagacgaccaactc |
49726759 |
T |
|
| Q |
211 |
cacgatattttgctacaaaaaagctgtgatattctaacatatgattccatgttcacggtcaatacacctttggtttcatctcgtttggaatattacgtaa |
310 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
49726760 |
cacgatcttttgctacaaaaaagctgtgatattctaacatatgattcaatgttcatggtcaacacacctttggtttcatctcgtttggaatattacgtaa |
49726859 |
T |
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| Q |
311 |
ctgttttcggatgcaacagcaacaactcactcgatcttcaacaatactattctgtttctaattctagctccatttgtagagaagatactactacttt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49726860 |
ctgttttcggatgcaacagcaacaactcactcgatcttcaacaatactattctgtttctaattctagctccatttgtagagaagatactactacttt |
49726956 |
T |
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