View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_low_3 (Length: 417)
Name: NF16868_low_3
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 31224099 - 31224459
Alignment:
| Q |
17 |
tcaacctccctaatgatgaaaaaatgcgcttattttctgatgatgttcacaatcctgtaagatatggaactagtcttaatcaagccaaggatgaagtttt |
116 |
Q |
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| T |
31224099 |
tcaacctccctaatgatgaaaaaatgcgcttattttctgatgatgttcacaaacctgtaagatatggaacaagtcttaatcaagccaaggatgaagtttt |
31224198 |
T |
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| Q |
117 |
ttgctggagagatttcatcaaacattactctcatccaatagcagattggattcatatgtggccttcaaatccatccacttataggtgtgtact----att |
212 |
Q |
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| T |
31224199 |
ttgctggagagatttcatcaaacattactctcatccaatagcagattggattcatatgtggccttcaaatccatccacttataggtgtgtactattaatt |
31224298 |
T |
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| Q |
213 |
aatgtagacattttcaaattaatgcaaaatctttttcaatcaacaataaatttattaaaacaactttttattgatatgaagagttccttaccttgtgtc- |
311 |
Q |
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| T |
31224299 |
aatgtagacattttcaaattaatgccaaatc-ttttcaatcaacaataaatttattaaaacaactttttgttgatatcaagagttccttaccttgtgtca |
31224397 |
T |
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| Q |
312 |
-----nnnnnnnnnnncttcttaacttcgaaatttaaatagaatgatgaagtttgacttatc |
368 |
Q |
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| T |
31224398 |
aaaaaaaaaaaaaaaacttcttaacttcgaaatttaaatagaatgatgaagtttgacttatc |
31224459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 364 - 399
Target Start/End: Original strand, 31224563 - 31224598
Alignment:
| Q |
364 |
ttatcactattgtctacgtgggtcatgtccgtatct |
399 |
Q |
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| T |
31224563 |
ttatcactattgtctacgtgggtcatgtccgtatct |
31224598 |
T |
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