View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16868_low_4 (Length: 386)

Name: NF16868_low_4
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16868_low_4
NF16868_low_4
[»] chr5 (3 HSPs)
chr5 (17-355)||(10117722-10118053)
chr5 (246-356)||(41748270-41748380)
chr5 (257-358)||(34082488-34082589)
[»] chr4 (1 HSPs)
chr4 (225-358)||(18931260-18931391)
[»] scaffold0236 (1 HSPs)
scaffold0236 (246-355)||(12684-12793)
[»] chr6 (2 HSPs)
chr6 (231-318)||(14560552-14560639)
chr6 (246-310)||(6609551-6609615)
[»] chr7 (2 HSPs)
chr7 (225-301)||(246064-246140)
chr7 (260-309)||(38042084-38042133)
[»] chr1 (1 HSPs)
chr1 (273-318)||(10008580-10008625)
[»] chr2 (1 HSPs)
chr2 (273-310)||(25553251-25553288)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 17 - 355
Target Start/End: Original strand, 10117722 - 10118053
Alignment:
Q  17 gaatctatatgattacgtgagatgcaagataggaactgtgaaaaggaaaatacaagagatagaaaactacatataaaa-cattggttgaatttcgacgta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10117722 gaatctatatgattacgtgagatgcaagataggaactgtgaaaaggaaaatacaagagatagaaaactacatataaaaacattggttgaatttcgacgta 10117821  T
Q  116 tatattatgcccaattgcttttcgtaatggtcaacaaattctaacaagatccaaagacatttgttggtttggaattggatcgtgtgcgttcttagaatct 215  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||    
T  10117822 tatattatgcccaattgcttttcgtaatggtcaacatattctaacaagatccaaagacatttgttggtttggaattggatcgtgt------ttagaatct 10117915  T
Q  216 taggtagggacttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgc 315  Q
    |||||||||||||| |||||||||| |||||| || ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  10117916 taggtagggacttggatcctctccagcgacaa-ttcact-gatgctccgcagtgaaaatctgaacctttaattacccttttaataattataaatgcttgc 10118013  T
Q  316 aattnnnnnnnttgaatggagaggatctcattggactctc 355  Q
    ||||       ||||| |||||||||||||||||||||||    
T  10118014 aattaaaaaaattgaacggagaggatctcattggactctc 10118053  T

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Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 246 - 356
Target Start/End: Original strand, 41748270 - 41748380
Alignment:
Q  246 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctca 345  Q
    ||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||       |||||||||||||||||||    
T  41748270 aatttcactggatgctctggagtgaaaatctaaacctttaattacccttttaataattataaatgcttgcaattaaaaaaattgaatggagaggatctca 41748369  T
Q  346 ttggactctcc 356  Q
     ||||||||||    
T  41748370 ctggactctcc 41748380  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 34082488 - 34082589
Alignment:
Q  257 atgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctcattggactctcc 356  Q
    ||||||| | |||||||||| ||| |||||||||||||||||||||||| |||| ||||||||       ||||| ||||| ||||| | ||||||||||    
T  34082488 atgctctacggtgaaaatctaaacctttaattacccttttaataattattaatgcttgcaattaaaaaaattgaacggagatgatcttactggactctcc 34082587  T
Q  357 ag 358  Q
    ||    
T  34082588 ag 34082589  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 358
Target Start/End: Complemental strand, 18931391 - 18931260
Alignment:
Q  225 acttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnn 324  Q
    ||||| ||||||||||  || ||||| ||| ||| ||||  ||||||||||||||| |||||||| |||||||||||||||||||| ||||||||         
T  18931391 acttggatcctctccagtgaaaatttcactagatactct--agtgaaaatctgaacttttaattatccttttaataattataaatgcttgcaattaaaaa 18931294  T
Q  325 nnttgaatggagaggatctcattggactctccag 358  Q
      ||||||||||||||||||| || |||||||||    
T  18931293 aattgaatggagaggatctcactgaactctccag 18931260  T

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Target: scaffold0236 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 355
Target Start/End: Original strand, 12684 - 12793
Alignment:
Q  246 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaattnnnnnnnttgaatggagaggatctca 345  Q
    ||||| ||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||| |||        || ||||||||||||||||    
T  12684 aatttcactggatactctgcagtgtagatctgaacctttaattacccttttaataattataaatgtttgaaatgaaaaaaattaaatggagaggatctca 12783  T
Q  346 ttggactctc 355  Q
    ||||| ||||    
T  12784 ttggattctc 12793  T

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Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 231 - 318
Target Start/End: Complemental strand, 14560639 - 14560552
Alignment:
Q  231 atcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatgtttgcaat 318  Q
    ||||||||||  || ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||  |||||||    
T  14560639 atcctctccagtgagaatttcactggatgctctgcagtgaaaatctaaacttttaattacctttttaataattataaatacttgcaat 14560552  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 6609551 - 6609615
Alignment:
Q  246 aattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataattataaatg 310  Q
    |||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||    
T  6609551 aattttactggatgctctgcagtgtagatctgaacctttaattacccttttcataattataaatg 6609615  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 225 - 301
Target Start/End: Original strand, 246064 - 246140
Alignment:
Q  225 acttgcatcctctccatcgacaattttactggatgctctgcagtgaaaatctgaacatttaattacccttttaataa 301  Q
    ||||| |||||||||   || ||||| ||||||||||||||||||||||||| ||| |||||||||| |||||||||    
T  246064 acttggatcctctccgatgaaaatttcactggatgctctgcagtgaaaatctaaacctttaattacctttttaataa 246140  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 38042133 - 38042084
Alignment:
Q  260 ctctgcagtgaaaatctgaacatttaattacccttttaataattataaat 309  Q
    ||||||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  38042133 ctctgcagtgaaaatctaaacttttaactacccttttaataattataaat 38042084  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 273 - 318
Target Start/End: Complemental strand, 10008625 - 10008580
Alignment:
Q  273 atctgaacatttaattacccttttaataattataaatgtttgcaat 318  Q
    |||||||  |||||||||||| ||||||||||||||||||||||||    
T  10008625 atctgaaactttaattaccctcttaataattataaatgtttgcaat 10008580  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Original strand, 25553251 - 25553288
Alignment:
Q  273 atctgaacatttaattacccttttaataattataaatg 310  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  25553251 atctaaacctttaattacccttttaataattataaatg 25553288  T

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