View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16868_low_6 (Length: 300)
Name: NF16868_low_6
Description: NF16868
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16868_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 36101223 - 36101512
Alignment:
| Q |
1 |
taaaccaatttatatcaaaggtcaatcagactatgtgcagaaaccaattcctaaaaaagatatcgaatctatatggaaattgatggttgaaggtgagacg |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36101223 |
taaaccaatttatatcaaaggtcaatcagactatgtgaagaaaccaattcctaaaaaagatatcgaatctatatggaaattgatggttgaaggtgagacg |
36101322 |
T |
|
| Q |
101 |
ttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttcctcacagagctggaaacttgttcttgattcaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36101323 |
ttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttcctcacagagctggaaacttgttcttgattcaat |
36101422 |
T |
|
| Q |
201 |
acattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtttcacgaattcatgacgccctatg |
290 |
Q |
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| T |
36101423 |
acattaattcttggatagaagaatctcctggagctattgaacatcgtgtgaatttttcaaggttgtttcacgaattcatgacgccctatg |
36101512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 68 - 290
Target Start/End: Complemental strand, 36089781 - 36089559
Alignment:
| Q |
68 |
tctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttc |
167 |
Q |
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||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
36089781 |
tctatgtggaaattgatgattgaaggtgagactttgtctatgcaatggaatccttacggtggaaggatggaagagatatcgccatcaaaaacaccatttc |
36089682 |
T |
|
| Q |
168 |
ctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtt |
267 |
Q |
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| T |
36089681 |
cacatagagcagggaacttgttcatgattcaatactttaattcttggacagaagaatgtcccaagactattgaacgtcatgtgaatttttcaaggttgtt |
36089582 |
T |
|
| Q |
268 |
tcacgaattcatgacgccctatg |
290 |
Q |
| |
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| | ||||||||||||||||||| |
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| T |
36089581 |
ttatgaattcatgacgccctatg |
36089559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 282
Target Start/End: Complemental strand, 34971152 - 34970876
Alignment:
| Q |
6 |
caatttatatcaaaggtcaatcagactatgtgcagaaaccaattcctaaaaaagatatcgaatctatatggaaattgatggttgaaggtgagacgttgtc |
105 |
Q |
| |
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||||| || |||||| |||||||||||||||| | ||||| ||| | || ||| |||| ||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
34971152 |
caattaatttcaaagctcaatcagactatgtgaaaaaacctatttcaaagaaaaatatagaatccatatggaaaatgatgattgatggtgagacgttgca |
34971053 |
T |
|
| Q |
106 |
tatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttcctcacagagctggaaacttgttcttgattcaatacatt |
205 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| || ||||| || || |||||||||||| | ||| | |
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| T |
34971052 |
tatggaatggaatccttatggtggaaggatggaagagatattgtcatcagaaacaccgtttccccatagagcagggaatttgttcttgattgagtactat |
34970953 |
T |
|
| Q |
206 |
aattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtttcacgaattcatgac |
282 |
Q |
| |
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||| ||||||| ||||||||||||| || |||| ||| | | ||||||||||||||||||||| | |||||||||| |
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| T |
34970952 |
aatacttggattgaagaatctcctgaagttattaaacgtaacgtgaatttttcaaggtcgttttataaattcatgac |
34970876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 3 - 290
Target Start/End: Original strand, 21483213 - 21483500
Alignment:
| Q |
3 |
aaccaatttatatcaaaggtcaatcagactatgtgcagaaaccaattcctaaaaaagatatcgaatctatatggaaattgatggttgaaggtgagacgtt |
102 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| ||||||| ||||| ||| || ||| |||| ||||||| ||||||| || ||||||| | || |
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| T |
21483213 |
aaccaacttatatcaaaggtcaatcagattatgtgaagaaacctattccaaaagaaattatagaatgtatatgggaattgataattaaaggtgaaagttt |
21483312 |
T |
|
| Q |
103 |
gtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttcctcacagagctggaaacttgttcttgattcaatac |
202 |
Q |
| |
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| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||| ||| |
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| T |
21483313 |
gcttatgcaatggaatccttacggtggaaggatggaagaaatattgccatcagaaacaccatttcctcatagagcagggaacttgttcttgattttgtac |
21483412 |
T |
|
| Q |
203 |
attaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtttcacgaattcatgacgccctatg |
290 |
Q |
| |
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|||| |||||| | |||||| || ||||||||||| |||||||||||||||||||| || | || |||||||| ||||||| |
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| T |
21483413 |
tataataattggattaatgaatcttctcaagctattgaacgccatgtgaatttttcaaggtcagtttatgagttcatgacaccctatg |
21483500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 68 - 290
Target Start/End: Original strand, 36108555 - 36108777
Alignment:
| Q |
68 |
tctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaagagatattgccatcagaaacaccatttc |
167 |
Q |
| |
|
|||||||||||||||||| |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
36108555 |
tctatatggaaattgatgattgaaggtgagaatttccttatgcaatggaatccatatggtggaaggatggaagagatattgccatcagaaacaccgtttt |
36108654 |
T |
|
| Q |
168 |
ctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattgaacatcatgtgaatttttcaaggtcgtt |
267 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| ||||| ||| | |||||| ||| || || ||||| ||||||||||||||| || ||||| |
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| T |
36108655 |
ctcatagagcaggaaacttgttcttgattcaataccttaatatatggtctaatgaatcttctgaagttagtgaacgtcatgtgaatttttctagatcgtt |
36108754 |
T |
|
| Q |
268 |
tcacgaattcatgacgccctatg |
290 |
Q |
| |
|
| ||||| |||||||| |||| |
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| T |
36108755 |
ttttgaatttatgacgccttatg |
36108777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 8339147 - 8339382
Alignment:
| Q |
41 |
aaaccaattcctaaaaaagatatcgaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatccttatggtggaaggatggaag |
140 |
Q |
| |
|
||||| ||||| ||| ||| ||| ||||| |||||||||| |||| ||||||||||||| |||| |||||||||||||||| |||| ||||||||||||| |
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| T |
8339147 |
aaacctattccaaaagaagctatagaatcgatatggaaatcgatgattgaaggtgagactttgtttatgcaatggaatcctgatggcggaaggatggaag |
8339246 |
T |
|
| Q |
141 |
agatattgccatcagaaacaccatttcctcacagagctggaaacttgttcttgattcaatacattaattcttggatagaagaatctcctggagctattga |
240 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||| |||||| ||||||||| | |||||||||| |
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| T |
8339247 |
agatattgccatcagaaacaccatttccccatagagcaggaaacttgttcttgattcaatatcttaatatttggattgaagaatcttcaagagctattga |
8339346 |
T |
|
| Q |
241 |
acatcatgtgaatttttcaaggtcgtttcacgaatt |
276 |
Q |
| |
|
|| ||||||||||||||||||||||||||| ||||| |
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|
| T |
8339347 |
acgtcatgtgaatttttcaaggtcgtttcatgaatt |
8339382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 24 - 295
Target Start/End: Original strand, 6839272 - 6839543
Alignment:
| Q |
24 |
aatcagactatgtgcagaaaccaattcctaaaaaagatatcgaatctatatggaaattgatggttgaaggtgagacgttgtctatgcaatggaatcctta |
123 |
Q |
| |
|
||||||| |||||| ||||||| |||||||| ||| ||| ||||| ||||||||||||||| ||||||||||| || | ||||||||||||||| || |
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| T |
6839272 |
aatcagattatgtgaagaaacctattcctaaggaagctatagaatccatatggaaattgatgattgaaggtgaggatttatttatgcaatggaatccata |
6839371 |
T |
|
| Q |
124 |
tggtggaaggatggaagagatattgccatcagaaacaccatttcctcacagagctggaaacttgttcttgattcaatacattaat-tcttggatagaaga |
222 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||| | || | || |
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|
| T |
6839372 |
tggtggaaggatgaaagagatattgccatcagaaacaccgtttcctcatagagcaggaaacttgttcttgattctatacattaatatctggtcta-atga |
6839470 |
T |
|
| Q |
223 |
atctcctggagctattgaacatcatgtgaatttttcaaggtcgtttcacgaattcatgacgccctatgcttct |
295 |
Q |
| |
|
|||| ||| || || ||||| |||| |||||||||||||||||||| | ||||| ||||| || |||| |||| |
|
|
| T |
6839471 |
atcttctgaagttagtgaacttcatatgaatttttcaaggtcgttttatgaatttatgacaccttatgtttct |
6839543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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