View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16869_low_1 (Length: 448)
Name: NF16869_low_1
Description: NF16869
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16869_low_1 |
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| [»] scaffold0606 (1 HSPs) |
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Alignment Details
Target: scaffold0606 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: scaffold0606
Description:
Target: scaffold0606; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 19 - 431
Target Start/End: Original strand, 3801 - 4214
Alignment:
| Q |
19 |
agattacattcaaaattaaattctataaatattcaagtttaatctcaagcttaaagaatatataatggattttacttatctcttaac-aaaatttcaaat |
117 |
Q |
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| T |
3801 |
agattacattcaaaattaaattctataaatattcaaatttaatctcaaatttaaagaatatataatggattttacttatctcttaacgaaaatttcaaat |
3900 |
T |
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| Q |
118 |
tattagagtaatttttccaatgagtgaatttccattcgacttttaaataaaattgcaccatcaagatcatcagaactaccatattttagataagtcatta |
217 |
Q |
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| T |
3901 |
tataaaagtaacttttccaatgagtgaatttccatatgacttttaaataaaattgcaccatcaagatcgtcaggactaccatattttagataagtcatta |
4000 |
T |
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| Q |
218 |
tgcatatgttaatagttgaatcaaaatcaaattttatgatattgtgatccttaaagacatttcattgttctcatattgcatccataatttataaactaat |
317 |
Q |
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| T |
4001 |
tgcatatgttaataggtgaatcaaaatcaaattttatgatattgtgatccttaaagacatttcattgttctcatattgcatccataatttataaactaat |
4100 |
T |
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| Q |
318 |
atagactctgagatcatttacaaatcatcactttgacagaataccaaagcctagtgttatactcggcatcattgctactagggtgtctactattgtactc |
417 |
Q |
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| T |
4101 |
atagactctgagatcatttacaaatcatcactttgacagaataccaaagcctagtgttctactcagcatcatcgctactagggtgtttactattgtactc |
4200 |
T |
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| Q |
418 |
tctacaagtacaca |
431 |
Q |
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| T |
4201 |
tttacaagtacaca |
4214 |
T |
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Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 20649303 - 20649259
Alignment:
| Q |
214 |
attatgcatatgttaatagttgaatcaaaatcaaattttatgata |
258 |
Q |
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| T |
20649303 |
attatacatattttaatagttgaatcaaaatcaaattttatgata |
20649259 |
T |
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