View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1686_high_1 (Length: 550)

Name: NF1686_high_1
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1686_high_1
NF1686_high_1
[»] chr6 (2 HSPs)
chr6 (15-532)||(9538672-9539189)
chr6 (199-249)||(2445291-2445341)
[»] chr5 (3 HSPs)
chr5 (199-265)||(38756722-38756788)
chr5 (218-266)||(30488936-30488984)
chr5 (209-245)||(42608888-42608924)
[»] chr7 (3 HSPs)
chr7 (200-267)||(29726793-29726860)
chr7 (210-239)||(26980965-26980994)
chr7 (210-270)||(5458069-5458129)
[»] chr8 (2 HSPs)
chr8 (213-267)||(13284266-13284320)
chr8 (210-267)||(40167325-40167382)
[»] chr2 (1 HSPs)
chr2 (209-267)||(9547410-9547468)
[»] chr1 (6 HSPs)
chr1 (199-245)||(4896633-4896679)
chr1 (210-244)||(15382843-15382877)
chr1 (211-244)||(5553025-5553058)
chr1 (210-267)||(10841903-10841960)
chr1 (210-270)||(3777721-3777781)
chr1 (200-236)||(41032924-41032960)
[»] scaffold0008 (1 HSPs)
scaffold0008 (197-246)||(119559-119608)


Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 15 - 532
Target Start/End: Complemental strand, 9539189 - 9538672
Alignment:
Q  15 taacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttnnnnnnnn-tagtatatttaaaaaatcatatttgaacttagttcataatttaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  9539189 taacacaaggaaatctaaatgtgagtttctaatcttatgcatgagttaaaaaaaaatagtatatttaaaaaatcatatttgaacttagttcataatttaa 9539090  T
Q  114 ataattgaacaatgttccaacaacattgatatatcactgaaaaatttgtgtgagaagaatctgcaactataagctgatgcatgtgatgtcctcgaaagct 213  Q
    |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9539089 ataattcaacaatgttccaacaaaattgatatatcattgaaaaatttgtgtgagaagaatctgcaactataaactgatgcatgtgatgtcctcgaaagct 9538990  T
Q  214 taactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcggtcatcatnnnnnnnnntgatacatgtgatagttctccttgta 313  Q
    ||||||||||| ||| |||||||||||||||||| | ||| |||| ||||||||||||||||||          || |||||||||||||||||||| ||    
T  9538989 taactcagttggtataaacaatgtatcatatttataaggtctggggttcaaacctcggtcatca--ctaaaaaatggtacatgtgatagttctccttata 9538892  T
Q  314 gctactacgacagaatctacatatttcccttatcaaaaaa-tgattgacacatggagaggccttgttataaaagaaaagaatccaaaaattaagtaaacc 412  Q
    |||||||| |||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9538891 gctactaccacagaatctaaatatttcccttatcaaaaaaattattgacacatggagaggccttgttataaaagaaaagaatccaaaaattaagtaaacc 9538792  T
Q  413 acacacttcaaaaaatttagtcccattatattcactcttcaactaagttcctttatcaaagcatttaaccacttcttcattactctttactcaactctca 512  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9538791 acacacttcaaaaaatttagtaccattatattcactcttcaactaagtccctttatcaaagcatttaaccacttcttcatgactctttactcaactctca 9538692  T
Q  513 tacattttttcttctaactt 532  Q
    || |||||||||||||||||    
T  9538691 tatattttttcttctaactt 9538672  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 249
Target Start/End: Original strand, 2445291 - 2445341
Alignment:
Q  199 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttaca 249  Q
    ||||||||| |||||||||||||||||||||||||||| || |||| ||||    
T  2445291 atgtcctcgtaagcttaactcagttgatatgaacaatgcataatatataca 2445341  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 265
Target Start/End: Original strand, 38756722 - 38756788
Alignment:
Q  199 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaa 265  Q
    ||||||||| ||| ||||||||||||||||||| ||||||| |||| |||| |||| ||| ||||||    
T  38756722 atgtcctcgtaagtttaactcagttgatatgaataatgtataatatatacaaggttcggggttcaaa 38756788  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 218 - 266
Target Start/End: Original strand, 30488936 - 30488984
Alignment:
Q  218 tcagttgatatgaacaatgtatcatatttacacggtttgggattcaaac 266  Q
    ||||||||||||||||||| || |||| |||| |||||||| |||||||    
T  30488936 tcagttgatatgaacaatgcataatatatacaaggtttggggttcaaac 30488984  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 209 - 245
Target Start/End: Complemental strand, 42608924 - 42608888
Alignment:
Q  209 aagcttaactcagttgatatgaacaatgtatcatatt 245  Q
    |||||||||||||||||||||||||||| || |||||    
T  42608924 aagcttaactcagttgatatgaacaatgcataatatt 42608888  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 29726793 - 29726860
Alignment:
Q  200 tgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 267  Q
    ||||||||  |||||||||||||||| ||||||||||||| |||| | || |||| ||| ||||||||    
T  29726793 tgtcctcgtgagcttaactcagttgacatgaacaatgtataatatatgcaaggttcggggttcaaacc 29726860  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 239
Target Start/End: Complemental strand, 26980994 - 26980965
Alignment:
Q  210 agcttaactcagttgatatgaacaatgtat 239  Q
    ||||||||||||||||||||||||||||||    
T  26980994 agcttaactcagttgatatgaacaatgtat 26980965  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 5458129 - 5458069
Alignment:
Q  210 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcg 270  Q
    |||||| ||||||||||| |||||||| || |||| | || ||| ||||||||||||||||    
T  5458129 agcttagctcagttgataagaacaatgcataatatatgcaaggtctgggattcaaacctcg 5458069  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 267
Target Start/End: Complemental strand, 13284320 - 13284266
Alignment:
Q  213 ttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 267  Q
    ||||||||||||||||||||||||||| |||| || | |||||| | ||||||||    
T  13284320 ttaactcagttgatatgaacaatgtataatatatataaggtttgaggttcaaacc 13284266  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 40167325 - 40167382
Alignment:
Q  210 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 267  Q
    ||||||||||||||| |||| |||||| || |||| |||| |||| ||||||||||||    
T  40167325 agcttaactcagttggtatggacaatgcataatatatacaaggttcgggattcaaacc 40167382  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 9547468 - 9547410
Alignment:
Q  209 aagcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 267  Q
    ||||||||||||||||||||| |||||| || |||| | || |||||||| ||||||||    
T  9547468 aagcttaactcagttgatatggacaatgcataatatatgcaaggtttggggttcaaacc 9547410  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 4896633 - 4896679
Alignment:
Q  199 atgtcctcgaaagcttaactcagttgatatgaacaatgtatcatatt 245  Q
    ||||| ||| ||||||||||||||||||||| ||||||||| |||||    
T  4896633 atgtcttcgtaagcttaactcagttgatatggacaatgtataatatt 4896679  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 244
Target Start/End: Complemental strand, 15382877 - 15382843
Alignment:
Q  210 agcttaactcagttgatatgaacaatgtatcatat 244  Q
    |||||||||||||||||||||||||||||| ||||    
T  15382877 agcttaactcagttgatatgaacaatgtataatat 15382843  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 5553058 - 5553025
Alignment:
Q  211 gcttaactcagttgatatgaacaatgtatcatat 244  Q
    ||||||||||||||||||||||||||||| ||||    
T  5553058 gcttaactcagttgatatgaacaatgtataatat 5553025  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 267
Target Start/End: Original strand, 10841903 - 10841960
Alignment:
Q  210 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacc 267  Q
    |||||||||||||||||||| |||||| || |||| || | |||||| ||||||||||    
T  10841903 agcttaactcagttgatatggacaatgcataatatatataaggtttgagattcaaacc 10841960  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 3777721 - 3777781
Alignment:
Q  210 agcttaactcagttgatatgaacaatgtatcatatttacacggtttgggattcaaacctcg 270  Q
    |||||||||||||||||||| | ||||||| |||| |||| |||| | | |||||||||||    
T  3777721 agcttaactcagttgatatggataatgtataatatatacaaggttcgaggttcaaacctcg 3777781  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 41032924 - 41032960
Alignment:
Q  200 tgtcctcgaaagcttaactcagttgatatgaacaatg 236  Q
    ||||||||  |||||||||||||||||||||||||||    
T  41032924 tgtcctcgtgagcttaactcagttgatatgaacaatg 41032960  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 246
Target Start/End: Original strand, 119559 - 119608
Alignment:
Q  197 tgatgtcctcgaaagcttaactcagttgatatgaacaatgtatcatattt 246  Q
    |||||||||||  |||||||||||||||||| | ||||||||| ||||||    
T  119559 tgatgtcctcgtgagcttaactcagttgatagggacaatgtataatattt 119608  T

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