View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_high_10 (Length: 243)
Name: NF1686_high_10
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9394215 - 9393984
Alignment:
| Q |
1 |
cttggagatggtagcagagacattgtgacaaccagagataagcatgtgttgatagacagagggattgacgaaattcttcaagttaaggaaatgaactttc |
100 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9394215 |
cttggagctggtagcagagaaattgtgacaaccagagataagcatgtgttgataggcagagggattgacgaaattcttcaagttaaggaaatgaactttc |
9394116 |
T |
|
| Q |
101 |
aaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttcccaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9394115 |
aaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttccgaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaagg |
9394016 |
T |
|
| Q |
201 |
cgactctttggctttgaaagttctaggttcat |
232 |
Q |
| |
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|||||||||||||||||||||| | ||||||| |
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| T |
9394015 |
cgactctttggctttgaaagttatgggttcat |
9393984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12177049 - 12176818
Alignment:
| Q |
1 |
cttggagatggtagcagagacattgtgacaaccagagataagcatgtgttgatagacagagggattgacgaaattcttcaagttaaggaaatgaactttc |
100 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||| || |
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| T |
12177049 |
cttggagttggtagcagagtcattgtgacaaccagagataagcatgtgttgacaggaggaggaattgacgaaattcatcaagttaaggaaatgaactctc |
12176950 |
T |
|
| Q |
101 |
aaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttcccaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaagg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
12176949 |
aaaactccatcaggttgttcagtttgaatgctttcaaaaaaatccttcccaatgagggatatgaagagatatcaaacaatgtagtttcttatacaaaagg |
12176850 |
T |
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| Q |
201 |
cgactctttggctttgaaagttctaggttcat |
232 |
Q |
| |
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| || ||||||||||||||||||| ||||||| |
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| T |
12176849 |
caaccctttggctttgaaagttctgggttcat |
12176818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12421477 - 12421246
Alignment:
| Q |
1 |
cttggagatggtagcagagacattgtgacaaccagagataagcatgtgttgatagacagagggattgacgaaattcttcaagttaaggaaatgaactttc |
100 |
Q |
| |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| |||||||||||||||||||| || |
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| T |
12421477 |
cttggagttggtagcagagtcattgtgacaaccagagataagcatgtgttgacaggaggaggaattgacgaaattcatcaagttaaggaaatgaactctc |
12421378 |
T |
|
| Q |
101 |
aaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttcccaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaagg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||||||| ||||||||||||||| ||||||| |
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| T |
12421377 |
aaaactccatcaggttgttcagtttgaatgctttcaaaaaaatccttcccaatgagggatatgaagagatatcaaacaatgtagtttcttatacaaaagg |
12421278 |
T |
|
| Q |
201 |
cgactctttggctttgaaagttctaggttcat |
232 |
Q |
| |
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| || ||||||||||||||||||| ||||||| |
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| T |
12421277 |
caaccctttggctttgaaagttctgggttcat |
12421246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12188370 - 12188139
Alignment:
| Q |
1 |
cttggagatggtagcagagacattgtgacaaccagagataagcatgtgttgatagacagagggattgacgaaattcttcaagttaaggaaatgaactttc |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||||||||| | ||||| || ||||||| | || |
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|
| T |
12188370 |
cttggagctggtagcagagtcattgtgacaaccagagataagtatgtgttgacgggaggaggaattgacgaaattcatgaagttgagaaaatgaattctc |
12188271 |
T |
|
| Q |
101 |
aaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttcccaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaagg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||| || |||| |
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| T |
12188270 |
aaaactccatcaggttgtttagtttgaatgctttcaacaaaatccttcccaatgaaggatatgaggagatatcaaacaatgtagtttcttatacagaagg |
12188171 |
T |
|
| Q |
201 |
cgactctttggctttgaaagttctaggttcat |
232 |
Q |
| |
|
| || ||||||||||||||||||| ||||||| |
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|
| T |
12188170 |
caaccctttggctttgaaagttctgggttcat |
12188139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 12432798 - 12432567
Alignment:
| Q |
1 |
cttggagatggtagcagagacattgtgacaaccagagataagcatgtgttgatagacagagggattgacgaaattcttcaagttaaggaaatgaactttc |
100 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||||||||||| ||||||||| | |||| ||||||||||||| | ||||| || ||||||| | || |
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|
| T |
12432798 |
cttggagctggtagcagagtcattgtgacaaccagagataagtatgtgttgacgggaggaggaattgacgaaattcatgaagttgagaaaatgaattctc |
12432699 |
T |
|
| Q |
101 |
aaaactccatcaggttgttcagtttgaatgctttcaacaaaatcgttcccaatgaggggtatgaggagatatcaaataatgtagtttcttatgcaaaagg |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||| ||||||||||||||| || |||| |
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|
| T |
12432698 |
aaaactccatcaggttgtttagtttgaatgctttcaacaaaatccttcccaatgaaggatatgaggagatatcaaacaatgtagtttcttatacagaagg |
12432599 |
T |
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| Q |
201 |
cgactctttggctttgaaagttctaggttcat |
232 |
Q |
| |
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| || ||||||||||||||||||| ||||||| |
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| T |
12432598 |
caaccctttggctttgaaagttctgggttcat |
12432567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 42265792 - 42265724
Alignment:
| Q |
164 |
aggagatatcaaataatgtagtttcttatgcaaaaggcgactctttggctttgaaagttctaggttcat |
232 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||||||| |
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| T |
42265792 |
aggaaatatcaaacaatgtagtttcttatgcaaaaggcaaccatttggctttgaaagttctgggttcat |
42265724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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