View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_high_11 (Length: 231)
Name: NF1686_high_11
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 2 - 174
Target Start/End: Complemental strand, 11888363 - 11888191
Alignment:
| Q |
2 |
tacaaaccttagttaatgatattgttggaaatgatactcctacaaagaagccaaaaacaactccaacaatggctgctattatgagcttcattgcttcatt |
101 |
Q |
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| T |
11888363 |
tacaaaccttagttaacgatattgttggaaatgatactcctacaaagaagccaaaaacaactccaacaatggctgctattatgagcttcattgcttcatt |
11888264 |
T |
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| Q |
102 |
aggttttttaatatttccactgtaggacaaaacataaatttgttatatttgttacatgtaaatttctttgcta |
174 |
Q |
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| T |
11888263 |
aggttttttaatatttccactgtaggacaaaacataaatttgttatatttgttacatgcaaatttctttgcta |
11888191 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Complemental strand, 11888171 - 11888135
Alignment:
| Q |
190 |
caagtgagaaagaaagagtaatatgtattcatctcac |
226 |
Q |
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| T |
11888171 |
caagtgagaaagaaggagtaatatgtattcatgtcac |
11888135 |
T |
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