View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_high_14 (Length: 201)
Name: NF1686_high_14
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 21733181 - 21732994
Alignment:
| Q |
1 |
ctaatactgatttttcacactatacttgcaaattatagttaagctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacactatata |
100 |
Q |
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| T |
21733181 |
ctaatactgatttttcacactatacttgcaaattacagttaagctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacagtatata |
21733082 |
T |
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| Q |
101 |
actgacactattggaaaggttcaataataaccccttgttcacaatctaatctatttagtgccagtttggtatagtggtgggagtataa |
188 |
Q |
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| T |
21733081 |
actgacactattggaaaggttcaataataaccccttgttcacaatctaatctatttagtgcctgtttggtatagtggtgggagtataa |
21732994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 4 - 157
Target Start/End: Original strand, 3672047 - 3672199
Alignment:
| Q |
4 |
atactgatttttcacactatacttgcaaattatagttaagctaatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacactatataact |
103 |
Q |
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| T |
3672047 |
atactgatttttcacaccatacttgcaa-ttacagttaagttaatttagtcgtagcttaatgcaattagctccaaatagatacaaatacattatataaat |
3672145 |
T |
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| Q |
104 |
gacactattggaaaggttcaataataaccccttgttcacaatctaatctattta |
157 |
Q |
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| T |
3672146 |
aacattgttggaaatgttcaataataaccccttgttcacaatctattctattta |
3672199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 8e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 44518543 - 44518630
Alignment:
| Q |
45 |
taatttagtcgtagcttaatgcaattagctcgaaatagatacaaaaacactatataactgacactattggaaaggttcaataataacc |
132 |
Q |
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| T |
44518543 |
taatttagttgtagcttaatgcaattagctccaaatagatacaaatacagtatataaataacactattggaaatgttcaataataacc |
44518630 |
T |
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