View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_high_6 (Length: 345)
Name: NF1686_high_6
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 24580313 - 24580493
Alignment:
| Q |
1 |
acaatttgtaattttttagataatggaatacctatacacatgcatgaaaggaatcat--gagtgtgaatgcgtgtgtaatgaagagtacattaattgaat |
98 |
Q |
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| T |
24580313 |
acaatttgtaattttttagataatggaattcctatacacatgcatgaaaggaatcatatgagtgtgaatgcgtgtgtaatgaagagtacgttaattgaat |
24580412 |
T |
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| Q |
99 |
aataaacaacttggtttnnnnnnnnnnnnttgcacaaagattaatattggttccatgctcaatatctctctccttttcagg |
179 |
Q |
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| T |
24580413 |
aataaacaacttggtttaaaaaacaaaaattgcacaaagattaatattggttccatgctcaatatatctctccttttcagg |
24580493 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 24580548 - 24580643
Alignment:
| Q |
234 |
gatgatatttttcatcaagcaataaaatatatattaaatgtcaannnnnnnctttgagtgataaaatatattagatactacttcctatgacaaaat |
329 |
Q |
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| T |
24580548 |
gatgatatttttcattaagctataaaatatatattaaatgtcaatttttttctttgagtgataaaatatattagatactacttcctatgacaaaat |
24580643 |
T |
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