View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1686_low_13 (Length: 224)
Name: NF1686_low_13
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 187; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 29206626 - 29206816
Alignment:
| Q |
13 |
ttatactcaaacttagtgagatccaccattggaggagtagctacatggttcatagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagat |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29206626 |
ttatactcaaacttagtgagatccaccattggaggagtagctacatggttcatagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagat |
29206725 |
T |
|
| Q |
113 |
cttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggagggattgattttgtgcaagggc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29206726 |
cttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgaggaggaattgattttgtgcaagggc |
29206816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 29144946 - 29145085
Alignment:
| Q |
64 |
atagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatca |
163 |
Q |
| |
|
||||||||| |||||| |||||| ||| | ||||||||||||| |||| |||||||||| || ||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29144946 |
atagcagaagtcagtgatatcagcgcagtgacactgtggaggaatagattttgtgcaaagacagcttttgcaagctgagtgacatgtttctccaatatca |
29145045 |
T |
|
| Q |
164 |
gcacagtgacactgaggagggattgattttgtgcaagggc |
203 |
Q |
| |
|
| ||| || || |||||||||||||||||||||||||||| |
|
|
| T |
29145046 |
gtacaatggcattgaggagggattgattttgtgcaagggc |
29145085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 64 - 203
Target Start/End: Original strand, 29158077 - 29158216
Alignment:
| Q |
64 |
atagcagaaatcagtggtatcagtgcaacggcactgtggaggaaaagatcttgtgcaaaggcatcttttgcaagctgagtgacatttttctccaatatca |
163 |
Q |
| |
|
||||||||| | |||| ||||| |||||| ||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| || |||| |
|
|
| T |
29158077 |
atagcagaagttagtgatatcatagcaacgacactgtggaggaaaagaccgtgtgcaaaggcaacttttgcaagctgagtgacatttttctttaacatca |
29158176 |
T |
|
| Q |
164 |
gcacagtgacactgaggagggattgattttgtgcaagggc |
203 |
Q |
| |
|
| ||| ||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
29158177 |
gtacactgacattgaggtgggattgatcttgtgcaagggc |
29158216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 179
Target Start/End: Original strand, 29153497 - 29153547
Alignment:
| Q |
129 |
ttttgcaagctgagtgacatttttctccaatatcagcacagtgacactgag |
179 |
Q |
| |
|
|||||||||||||||||||| ||| ||||| |||||||||| ||||||||| |
|
|
| T |
29153497 |
ttttgcaagctgagtgacatgtttttccaacatcagcacagcgacactgag |
29153547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University