View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_low_2 (Length: 545)
Name: NF1686_low_2
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 7 - 540
Target Start/End: Original strand, 2390981 - 2391514
Alignment:
| Q |
7 |
gaatgtggataatgtgaaattgacttgatgttgatttggtatttgcagcatgatgtggatgctggggtgttgaagaaagtcgttttggctgatggtgcag |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2390981 |
gaatgtggataatgtgaaattgacttgatgttgatttggtatttgcagcatgatgtggatgctggggtgttgaagaaagtcgttttggctgatggtgcag |
2391080 |
T |
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| Q |
107 |
tggttactgtgaaaggtgcaagatcagtgagtcttcgccatcctctcactttacctctgccgttaaaccgaagccaaaatggctttgctgccgggcttct |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391081 |
tggttactgtgaaaggtgcaagatcagtgagtcttcgccatcctcttactttacctctgccgttaaaccgaagccaaaatggctttgctgccgggcttct |
2391180 |
T |
|
| Q |
207 |
cacgttggctgagcatctccgccatgcttctcgtggccaagatgctccccttctttcactccggattgttggtcctacctcacttgaagccccttcctct |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391181 |
cacgttggctgagcatctccgccatgcttctcgtggccaagatgctccccttctttcactccggattgttggtcctacctcacttgaagccccttcctct |
2391280 |
T |
|
| Q |
307 |
gcatcaacttcttctaataacaggttgaagcttaagcgtcttgcacctggtcttgtggagttatcgtctcaatcaaaatccaaattagttgacacttccc |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2391281 |
gcatcaacttcttctaataacaggttgaagcttaagcgtcttgcacctggtcttgtggagttatcctctcaatcaaaatccaaattagttgacacttccc |
2391380 |
T |
|
| Q |
407 |
tgtctaccgttgatctccaggaggaagccccgaccctccttactccaacccagtttaccgcattgtggcctcttgcctctcttaatggatcaaatgcaaa |
506 |
Q |
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| T |
2391381 |
tgtctaccgttgatctccaggaggaagccccgaccctccttactcctacccagtttaccgcattgtggcctcttgcctctcttaatggatcaaatgcaaa |
2391480 |
T |
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| Q |
507 |
cttgttgggttttgagagattgttatcttctgtg |
540 |
Q |
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| T |
2391481 |
cttgttgggttttgagagattgttatcttctgtg |
2391514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-107; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 157 - 542
Target Start/End: Complemental strand, 56190137 - 56189743
Alignment:
| Q |
157 |
ttacctctgccgttaaaccgaagccaaaatggctttgctgccgggcttctcacgttggctgagcatctccgccatgcttctcgtggccaagatgctcccc |
256 |
Q |
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||||||||||| || ||||||| || ||||| |||||||| ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| | |
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| T |
56190137 |
ttacctctgcccttgaaccgaacacagaatggttttgctgctgggcttctcaccttggctgagcatctccgttgtgcttctcgtggccagagtgctcctc |
56190038 |
T |
|
| Q |
257 |
ttctttcactccggattgttggtcctacctcacttgaagccccttcctctgca---tcaacttcttctaataacaggttgaagcttaagcgtcttgcacc |
353 |
Q |
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|||| |||||||| |||||||| ||||| || |||||||||||||||||||| ||||| ||||| |||||||||||||||| ||||| |||||||| |
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| T |
56190037 |
ttctctcactccgcattgttggccctacttcgcttgaagccccttcctctgctgtgtcaacctcttccgataacaggttgaagctcaagcggcttgcacc |
56189938 |
T |
|
| Q |
354 |
tggtcttgtggagttatcgtctcaatcaaaatccaaa------ttagttgacacttccctgtctaccgttgatctccaggaggaagccccgaccctcctt |
447 |
Q |
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|| |||||||||||||||||||||||||||| ||||| | | || ||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
56189937 |
tgctcttgtggagttatcgtctcaatcaaaacccaaagccaaatcaagcgagacttccctgtctaccgttgatctccaggaggaagccccgactctcctt |
56189838 |
T |
|
| Q |
448 |
actccaacccagtttaccgcattgtggcctcttgcctctcttaatggatcaaatgcaaacttgttgggttttgagagattgttatcttctgtgct |
542 |
Q |
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||||||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | | |||||||||||||||| |
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| T |
56189837 |
actccaacccagtttactgcattgtggcctcttgcctcccttaatggatcaaatacaaacttgttgggttttgaaaaactgttatcttctgtgct |
56189743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 113
Target Start/End: Complemental strand, 56190240 - 56190134
Alignment:
| Q |
7 |
gaatgtggataatgtgaaattgacttgatgttgatttggtatttgcagcatgatgtggatgctggggtgttgaagaaagtcgttttggctgatggtgcag |
106 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
56190240 |
gaatgtggataatgtgaaattgacttgatgttggtttggtatatgcagcatgatgtggatgctggggtgttgaagaaagttgttttggctgatggtgcag |
56190141 |
T |
|
| Q |
107 |
tggttac |
113 |
Q |
| |
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||||||| |
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| T |
56190140 |
tggttac |
56190134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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