View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1686_low_3 (Length: 476)

Name: NF1686_low_3
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1686_low_3
NF1686_low_3
[»] chr5 (19 HSPs)
chr5 (196-476)||(4385955-4386235)
chr5 (20-124)||(4385778-4385883)
chr5 (200-310)||(18731126-18731234)
chr5 (221-331)||(2823527-2823637)
chr5 (214-308)||(35412360-35412454)
chr5 (216-269)||(11778635-11778688)
chr5 (246-318)||(14830585-14830657)
chr5 (200-310)||(15577828-15577939)
chr5 (234-312)||(28207364-28207442)
chr5 (234-310)||(6391492-6391568)
chr5 (200-261)||(817844-817904)
chr5 (200-310)||(38876622-38876733)
chr5 (200-315)||(42108511-42108626)
chr5 (234-311)||(12580160-12580237)
chr5 (234-311)||(16844558-16844635)
chr5 (214-258)||(22859685-22859729)
chr5 (234-310)||(39963934-39964010)
chr5 (246-310)||(39981617-39981681)
chr5 (246-310)||(40417404-40417468)
[»] chr7 (16 HSPs)
chr7 (200-329)||(44073476-44073605)
chr7 (234-319)||(21144544-21144629)
chr7 (200-260)||(41170491-41170551)
chr7 (214-286)||(44736664-44736736)
chr7 (200-315)||(32555747-32555862)
chr7 (200-260)||(18793691-18793751)
chr7 (234-310)||(25685292-25685368)
chr7 (246-306)||(32420356-32420416)
chr7 (214-261)||(28249019-28249066)
chr7 (200-310)||(49103139-49103249)
chr7 (246-310)||(5034091-5034155)
chr7 (26-78)||(5034389-5034441)
chr7 (234-306)||(22166057-22166129)
chr7 (234-306)||(22224764-22224836)
chr7 (234-310)||(25072684-25072760)
chr7 (235-311)||(41937807-41937883)
[»] chr2 (10 HSPs)
chr2 (214-310)||(5712561-5712657)
chr2 (200-318)||(7598927-7599045)
chr2 (214-310)||(32700611-32700707)
chr2 (234-310)||(39848543-39848619)
chr2 (200-282)||(12677793-12677875)
chr2 (214-260)||(36758174-36758220)
chr2 (234-306)||(43898074-43898146)
chr2 (43-80)||(5712292-5712329)
chr2 (43-80)||(39848271-39848308)
chr2 (234-310)||(16054965-16055041)
[»] chr4 (24 HSPs)
chr4 (214-332)||(49225789-49225910)
chr4 (200-324)||(32526365-32526489)
chr4 (200-317)||(52973685-52973802)
chr4 (235-310)||(4435275-4435350)
chr4 (235-306)||(27292455-27292526)
chr4 (202-305)||(30920357-30920460)
chr4 (234-310)||(23620968-23621044)
chr4 (234-317)||(7912874-7912957)
chr4 (214-300)||(24014514-24014600)
chr4 (214-300)||(43024711-43024797)
chr4 (235-324)||(7997327-7997416)
chr4 (246-311)||(37244097-37244162)
chr4 (214-310)||(36105754-36105850)
chr4 (237-324)||(52264304-52264391)
chr4 (200-290)||(11432454-11432544)
chr4 (200-310)||(22319974-22320084)
chr4 (200-294)||(34373617-34373711)
chr4 (235-284)||(41819318-41819367)
chr4 (42-70)||(4557187-4557215)
chr4 (234-310)||(26660120-26660196)
chr4 (234-310)||(34510382-34510458)
chr4 (214-273)||(38076341-38076398)
chr4 (268-316)||(42237611-42237659)
chr4 (246-318)||(50528842-50528914)
[»] chr3 (10 HSPs)
chr3 (214-310)||(31132977-31133073)
chr3 (200-308)||(43242041-43242148)
chr3 (242-310)||(27483380-27483448)
chr3 (200-300)||(34008404-34008504)
chr3 (214-317)||(36159162-36159266)
chr3 (214-310)||(44890657-44890753)
chr3 (214-307)||(33458639-33458732)
chr3 (200-285)||(43946676-43946761)
chr3 (200-300)||(11836910-11837010)
chr3 (246-310)||(21523861-21523925)
[»] chr1 (21 HSPs)
chr1 (200-288)||(42323430-42323518)
chr1 (200-311)||(11751627-11751738)
chr1 (234-329)||(23757292-23757387)
chr1 (235-310)||(30562268-30562343)
chr1 (213-311)||(10158005-10158103)
chr1 (26-80)||(3022911-3022965)
chr1 (236-317)||(41438337-41438419)
chr1 (200-257)||(35879675-35879732)
chr1 (234-310)||(47295753-47295829)
chr1 (234-329)||(7287255-7287350)
chr1 (203-310)||(23981410-23981517)
chr1 (234-313)||(25412324-25412403)
chr1 (200-310)||(2759011-2759121)
chr1 (200-310)||(6213099-6213209)
chr1 (234-311)||(642725-642802)
chr1 (234-311)||(3839366-3839443)
chr1 (214-315)||(11862547-11862648)
chr1 (216-257)||(18379255-18379296)
chr1 (234-310)||(4362196-4362272)
chr1 (202-310)||(4402201-4402309)
chr1 (246-310)||(45339072-45339136)
[»] chr8 (15 HSPs)
chr8 (234-311)||(21019752-21019829)
chr8 (234-310)||(22738597-22738673)
chr8 (219-310)||(9552506-9552596)
chr8 (200-329)||(10710114-10710243)
chr8 (234-310)||(30469370-30469446)
chr8 (234-310)||(35458783-35458859)
chr8 (234-310)||(40691164-40691240)
chr8 (26-76)||(31587660-31587710)
chr8 (200-282)||(33437291-33437373)
chr8 (200-306)||(38996091-38996197)
chr8 (200-306)||(44602113-44602219)
chr8 (43-80)||(16998278-16998315)
chr8 (269-310)||(17006323-17006364)
chr8 (269-310)||(17570884-17570925)
chr8 (234-310)||(31587981-31588057)
[»] scaffold0330 (1 HSPs)
scaffold0330 (236-310)||(11006-11080)
[»] chr6 (5 HSPs)
chr6 (214-282)||(10265803-10265871)
chr6 (214-290)||(10667581-10667657)
chr6 (200-310)||(2803833-2803944)
chr6 (200-290)||(9104381-9104471)
chr6 (257-310)||(33011614-33011667)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 196 - 476
Target Start/End: Original strand, 4385955 - 4386235
Alignment:
Q  196 gactaattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaa 295  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4385955 gactaattctctaaataatcatgttaaatatcaagaaagagtttaatatcattgatctattagtttactattttatttaaacttagatcatattatttaa 4386054  T
Q  296 ttaaaaatgttcataaaaaatatattttttaacatgtcatatcaaactttcaacaaaccagacttaaatcttgaaaatacaaagtctagttcgaactagt 395  Q
    ||||||||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| |||||||||||||| |||||    
T  4386055 ttaaaaatgttcatagaaaatatgttttttaacatgtcatatcagactttcaacgaaccagacttaagtcttgaaaatataaagtctagttcgatctagt 4386154  T
Q  396 ctacttccaccctttcatgtattccattactctatattcctattttcttcattaagtttttatatagccttgtcggtttct 476  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4386155 ctatttccaccctttcatgtattccattactctatattcctattttcttcatgaagtttttatatagccttgtcggtttct 4386235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 20 - 124
Target Start/End: Original strand, 4385778 - 4385883
Alignment:
Q  20 tttacgtagagaaggcttatgcctttttaaaagtttatttaacttaaaaggtcaggccacagtcat-nnnnnnncctcttaaaactatcagactaattca 118  Q
    |||| ||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||| ||||        |||||||||||||||||||||||| |    
T  4385778 tttaagtagagaaggcttatgcttttttaaaaggttatttaactaaaaaggtcagaccacaatcataaaaaaaacctcttaaaactatcagactaattta 4385877  T
Q  119 caagta 124  Q
    ||||||    
T  4385878 caagta 4385883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 18731126 - 18731234
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||||||||||   || ||||||||||||| ||  |||||||||||||||||||||||||| |||| | ||||||| |||||||   |||||||| | |     
T  18731126 aattctctaaaacttcgtgttaaatatcaaaaa--agtttaatatcattgatctattagttcactaatctatttaagcttagattgcattatttattaac 18731223  T
Q  300 aaatgttcata 310  Q
    |||||||||||    
T  18731224 aaatgttcata 18731234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 221 - 331
Target Start/End: Original strand, 2823527 - 2823637
Alignment:
Q  221 aaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatatat 320  Q
    ||||||||| |  ||||||||||||||||||| |||||||   |||||||||||| |||| |||| |||| ||| |||| ||||||||||  ||||| |     
T  2823527 aaatatcaaaagagagtttaatatcattgatccattagttcgttagtttatttaaccttatatcacattacttatttaataatgttcatatgaaataaac 2823626  T
Q  321 tttttaacatg 331  Q
    |||| ||||||    
T  2823627 ttttaaacatg 2823637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 214 - 308
Target Start/End: Complemental strand, 35412454 - 35412360
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttca 308  Q
    ||||||||||||| || | | ||||||||  ||||||| |||||||| |||||| || | ||||||||||||||||| ||| ||||| |||||||    
T  35412454 tcatgttaaatatgaaaaggtagtttaatcccattgatttattagttcactagtctactcaaacttagatcatattacttatttaaagatgttca 35412360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 269
Target Start/End: Complemental strand, 11778688 - 11778635
Alignment:
Q  216 atgttaaatatcaagaaggagtttaatatcattgatctattagtttactagttt 269  Q
    |||||||||||||| |  |||||||||||||||||||||||||||| |||||||    
T  11778688 atgttaaatatcaaaagagagtttaatatcattgatctattagtttgctagttt 11778635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 14830657 - 14830585
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatat 318  Q
    ||||| |||||||||| |||||  ||||||||||||||||||||  ||| ||||| |||||||||||| ||||    
T  14830657 attgaactattagtttgctagtccatttaaacttagatcatattgcttacttaaagatgttcataaaatatat 14830585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 15577939 - 15577828
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaa-ggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaatta 298  Q
    ||||||||||| | ||||||||||||| || || |||||||||| |  ||||  |||||||| |||||  || |||||||||||||| ||||  || |||    
T  15577939 aattctctaaaaattcatgttaaatataaaaaaaggagtttaatcttgttgagttattagttaactagactaattaaacttagatcacattacctattta 15577840  T
Q  299 aaaatgttcata 310  Q
    ||||||||||||    
T  15577839 aaaatgttcata 15577828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 312
Target Start/End: Original strand, 28207364 - 28207442
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaa 312  Q
    ||||||||| | ||||| |||||||||  |||||  |||||||||||||||| |||  ||| |||||||||||||||||    
T  28207364 gagtttaatttaattgaactattagttcgctagtccatttaaacttagatcacattgcttatttaaaaatgttcataaa 28207442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 6391492 - 6391568
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||| ||||||||  ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  6391492 gagtttaatctaattgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcata 6391568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 261
Target Start/End: Original strand, 817844 - 817904
Alignment:
Q  200 aattctctaaataa-tcatgttaaatatcaagaaggagtttaatatcattgatctattagttt 261  Q
    ||||||||||| || ||||||||||||||||||  ||||||||| ||||||||| ||||||||    
T  817844 aattctctaaaaaaatcatgttaaatatcaaga--gagtttaatctcattgatccattagttt 817904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 38876733 - 38876622
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatc-tattagtttactagtttatttaaacttagatcatattatttaatta 298  Q
    |||| |||||| | ||||||| | |||||| || ||||||||| | ||||||  ||||||||| || || ||||||||||||||||  ||| |||| |||    
T  38876733 aattttctaaaaactcatgttgattatcaaaaaagagtttaatctaattgataatattagtttgctggtctatttaaacttagatctcattgtttattta 38876634  T
Q  299 aaaatgttcata 310  Q
    || |||||||||    
T  38876633 aagatgttcata 38876622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 315
Target Start/End: Complemental strand, 42108626 - 42108511
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||| ||||| | ||||||| | |||||| |  ||||||||| | |||||| ||||||||  ||||| ||||||||||| |||||||||  ||| ||||    
T  42108626 aattccctaaaaattcatgttgattatcaaaagagagtttaatctaattgatatattagttcgctagtctatttaaacttggatcatattgcttatttaa 42108527  T
Q  300 aaatgttcataaaaaa 315  Q
    | ||||| ||| ||||    
T  42108526 agatgttaatacaaaa 42108511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 12580160 - 12580237
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    ||||||||| | ||||| |||||||||  |||||  |||||||||||||||| |||  ||| ||||| ||||||||||    
T  12580160 gagtttaatctaattgaactattagttcgctagtccatttaaacttagatcacattgcttatttaaagatgttcataa 12580237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 16844558 - 16844635
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    ||||||||| | ||||| |||||||||  |||||  |||||||||||||||| |||  ||| ||||| ||||||||||    
T  16844558 gagtttaatctaattgaactattagttcgctagtccatttaaacttagatcacatttcttatttaaagatgttcataa 16844635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 22859685 - 22859729
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattag 258  Q
    |||| ||||||||||| |  |||||||||||||||||||||||||    
T  22859685 tcatattaaatatcaaaagagagtttaatatcattgatctattag 22859729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 39964010 - 39963934
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| |  ||||| ||||||||   |||| ||||||||||||||| |||||| ||| ||||| |||||||||    
T  39964010 gagtttaatctagttgatttattagttcgttagtctatttaaacttagattatattacttatttaaagatgttcata 39963934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 39981681 - 39981617
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||| |||||||| |||||| ||||||||||| ||||| |||  ||| ||||| |||||||||    
T  39981681 attgatatattagttcactagtctatttaaacttcgatcacattgcttatttaaatatgttcata 39981617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 40417404 - 40417468
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||| |||||||| |||||| ||||||||||| ||||| |||  ||| ||||| |||||||||    
T  40417404 attgatatattagttcactagtctatttaaacttcgatcacattgcttatttaaagatgttcata 40417468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 44073476 - 44073605
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||| |||||||||||||||||||||| | ||||||||||  ||||| ||||||||||  ||| | |||| ||||| | ||||||||| ||| ||||    
T  44073476 aattctccaaataatcatgttaaatatcaaaagggagtttaatcgcattggtctattagttcgctattctattcaaactcatatcatattacttatttaa 44073575  T
Q  300 aaatgttcataaaaaatatattttttaaca 329  Q
    |||| ||||||  |||||| ||||| ||||    
T  44073576 aaatattcatatgaaatatgtttttaaaca 44073605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 319
Target Start/End: Original strand, 21144544 - 21144629
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatata 319  Q
    ||||||||| | ||||||||||||||| |||||| |||||||||||| |||| ||||  || ||||| ||||||||| || |||||    
T  21144544 gagtttaatctaattgatctattagttcactagtctatttaaacttatatcacattaagtatttaaagatgttcatataacatata 21144629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 41170491 - 41170551
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtt 260  Q
    ||||||||||| | |||||||||||||||| || ||||||||| || ||||||||||||||    
T  41170491 aattctctaaaaattcatgttaaatatcaaaaaagagtttaatctcgttgatctattagtt 41170551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 286
Target Start/End: Original strand, 44736664 - 44736736
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcat 286  Q
    |||||||||||||||| |  |||||||||| ||||||||||||| ||| || || ||||||| ||||||||||    
T  44736664 tcatgttaaatatcaaaagagagtttaataccattgatctattaatttgctcgtctatttaatcttagatcat 44736736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 32555747 - 32555862
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||| ||||| | ||||||| | |||||| |  ||||| ||| | |||||| |||| ||| |||||| ||||||||||||||||| |||  ||| ||||    
T  32555747 aattccctaaaaattcatgttgattatcaaaagagagttaaatctaattgatatatttgttcactagtctatttaaacttagatcacattgcttatttaa 32555846  T
Q  300 aaatgttcataaaaaa 315  Q
    ||||||||||| ||||    
T  32555847 aaatgttcatataaaa 32555862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 18793751 - 18793691
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtt 260  Q
    ||||||||||| | |||||||||||||||| |  |||||||||  ||||||||||||||||    
T  18793751 aattctctaaaaattcatgttaaatatcaaaagagagtttaatcgcattgatctattagtt 18793691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 25685368 - 25685292
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||| ||||||||  ||||| |||||||||||||||||||||  ||| ||||| || ||||||    
T  25685368 gagtttaatctaattgatatattagttcgctagtctatttaaacttagatcatattgcttatttaaatatattcata 25685292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 306
Target Start/End: Complemental strand, 32420416 - 32420356
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgtt 306  Q
    |||||| ||||||||| ||||||| ||||||||||||||| |||  ||| |||||||||||    
T  32420416 attgatatattagtttgctagtttgtttaaacttagatcacattgcttatttaaaaatgtt 32420356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 214 - 261
Target Start/End: Original strand, 28249019 - 28249066
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagttt 261  Q
    |||||||||||||||| || ||||||||| | ||||||||||||||||    
T  28249019 tcatgttaaatatcaaaaaagagtttaatctaattgatctattagttt 28249066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 49103139 - 49103249
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| | | ||||||||||||||   ||| |||||| | |||||| || || |||  | || |||||||||||| ||||||||| ||| ||||    
T  49103139 aattctctaaaaatttatgttaaatatcaaattggaatttaattttattgatttagtaatttgatggtctatttaaacttaaatcatattacttatttaa 49103238  T
Q  300 aaatgttcata 310  Q
    | |||||||||    
T  49103239 atatgttcata 49103249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 5034155 - 5034091
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||||||||||  ||||| ||||||||||| ||||| |||  ||| ||||| |||||||||    
T  5034155 attgatctattagttcgctagtctatttaaactttgatcacattgcttatttaaatatgttcata 5034091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 26 - 78
Target Start/End: Complemental strand, 5034441 - 5034389
Alignment:
Q  26 tagagaaggcttatgcctttttaaaagtttatttaacttaaaaggtcaggcca 78  Q
    |||||||||| || || |||||| |||  ||||||||||||||||||||||||    
T  5034441 tagagaaggcataggcttttttagaagcctatttaacttaaaaggtcaggcca 5034389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 22166057 - 22166129
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgtt 306  Q
    ||||||||| | |||||||||||||||   ||||| ||| ||||||| |||| |||||||| ||||| |||||    
T  22166057 gagtttaatttaattgatctattagttcgttagttgattaaaacttaaatcacattatttatttaaagatgtt 22166129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 22224764 - 22224836
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgtt 306  Q
    ||||||||| | |||||||||||||||   ||||| ||| ||||||| |||| |||||||| ||||| |||||    
T  22224764 gagtttaatttaattgatctattagttcgttagttgattaaaacttaaatcacattatttatttaaagatgtt 22224836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 25072760 - 25072684
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||||||||||||||||| |   |||| ||||||| |||  |||| |||| ||| ||||| |||||||||    
T  25072760 gagtttaatatcattgatctattagctcgttagtctatttaaccttgaatcacattacttatttaaagatgttcata 25072684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 235 - 311
Target Start/End: Original strand, 41937807 - 41937883
Alignment:
Q  235 agtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    |||||||||| ||||| ||||||| |  ||||| |||||||||||| |||  ||| |||| ||||| ||||||||||    
T  41937807 agtttaatataattgaactattagatctctagtctatttaaacttaaatcgcattgtttatttaaagatgttcataa 41937883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 214 - 310
Target Start/End: Original strand, 5712561 - 5712657
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||||||||||| |  ||||||||||||||||||||||||  || ||||| ||||||| ||||||||| |||| ||| ||||| |||||||||    
T  5712561 tcatgttaaatatcaaaagagagtttaatatcattgatctattaacttgctagtctatttaaccttagatcacattacttatttaaatatgttcata 5712657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 318
Target Start/End: Complemental strand, 7599045 - 7598927
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||||||||||||||||||||||||||||| | || | |||||  ||||||| ||||||||   |||| |||| ||| | ||||||  ||| ||| ||||    
T  7599045 aattctctaaataatcatgttaaatatcaaaagggggcttaatcacattgatatattagttcgatagtctattcaaattcagatcacgttacttatttaa 7598946  T
Q  300 aaatgttcataaaaaatat 318  Q
    | ||||||||| |||||||    
T  7598945 atatgttcatataaaatat 7598927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 32700707 - 32700611
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||||||||| | |  |||||||||||||||||| ||||||||  ||||| ||||||| |||  |||| |||| ||| ||||| |||||||||    
T  32700707 tcatgttaaatatcgaaagagagtttaatatcattgatttattagttcgctagtctatttaaccttgaatcacattacttatttaaagatgttcata 32700611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 39848543 - 39848619
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||||| |||||||||||||  ||||| |||||||||||  |||| |||| ||| ||||| |||||||||    
T  39848543 gagtttaatatcactgatctattagttcgctagtctatttaaacttgaatcacattacttatttaaagatgttcata 39848619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 12677793 - 12677875
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttaga 282  Q
    |||||| |||| | |||||||||||||||| ||  |||||||| || ||||| |||||||  ||||||||||||||| |||||    
T  12677793 aattctttaaaaattcatgttaaatatcaaaaaaaagtttaatctcgttgatatattagtccactagtttatttaaatttaga 12677875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 260
Target Start/End: Complemental strand, 36758220 - 36758174
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtt 260  Q
    |||||||||||||||| |  |||||||||||||||||||||||||||    
T  36758220 tcatgttaaatatcaaaagagagtttaatatcattgatctattagtt 36758174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 43898146 - 43898074
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgtt 306  Q
    ||||||||| | |||||| ||||||||| ||||  ||||||||||||||||| ||| |||| ||||| |||||    
T  43898146 gagtttaatctaattgatatattagtttgctagactatttaaacttagatcacattgtttatttaaagatgtt 43898074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 5712292 - 5712329
Alignment:
Q  43 tttttaaaagtttatttaacttaaaaggtcaggccaca 80  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  5712292 tttttaaaagtttatttaatttaaaaggtcagaccaca 5712329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 39848271 - 39848308
Alignment:
Q  43 tttttaaaagtttatttaacttaaaaggtcaggccaca 80  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  39848271 tttttaaaagtttatttagcttaaaaggccaggccaca 39848308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 16055041 - 16054965
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||| ||||||||  ||||| ||||||||||||||| | ||| |||| | ||| |||||||||    
T  16055041 gagtttaatctaattgatatattagttcgctagtctatttaaacttagattacattgtttattcaaagatgttcata 16054965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 214 - 332
Target Start/End: Original strand, 49225789 - 49225910
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctat--tagtttactagtttatttaaacttagatcatatta-tttaattaaaaatgttcata 310  Q
    |||| ||||||||||| |  |||||||||  |||||||||||  || ||| |||||||||||||||||||||||||||| |||  |||||||| ||||||    
T  49225789 tcatattaaatatcaaaatagagtttaatcacattgatctatattaatttgctagtttatttaaacttagatcatattattttttttaaaaatcttcata 49225888  T
Q  311 aaaaatatattttttaacatgt 332  Q
     ||||||| ||||| |||||||    
T  49225889 taaaatatgtttttaaacatgt 49225910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 200 - 324
Target Start/End: Complemental strand, 32526489 - 32526365
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| | |||||||||||||||| |  ||||||||| | |||||| ||||||||| ||| | ||||||||||||||||   ||| ||| ||||    
T  32526489 aattctctaaaaattcatgttaaatatcaaaagcgagtttaatcttattgatttattagtttgctaatctatttaaacttagatcgcgttacttatttaa 32526390  T
Q  300 aaatgttcataaaaaatatattttt 324  Q
    |  ||||||||  ||||||||||||    
T  32526389 atttgttcatatgaaatatattttt 32526365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 200 - 317
Target Start/End: Complemental strand, 52973802 - 52973685
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| | ||||||||| |||||| | | | ||||||  ||||||||||||||||  ||||| ||||| ||||||||||| |||| ||| ||||    
T  52973802 aattctctaaacattcatgttaattatcaaaaggaaatttaatcacattgatctattagttcgctagtctattttaacttagatcacattacttatttaa 52973703  T
Q  300 aaatgttcataaaaaata 317  Q
    | ||||||| | ||||||    
T  52973702 agatgttcaaataaaata 52973685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 310
Target Start/End: Original strand, 4435275 - 4435350
Alignment:
Q  235 agtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||| | |||||||||||||||| ||||| |||||||||||| |||| ||| |||| ||||| |||||||||    
T  4435275 agtttaatctaattgatctattagtttgctagtctatttaaacttatatcacattgtttatttaaagatgttcata 4435350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 306
Target Start/End: Original strand, 27292455 - 27292526
Alignment:
Q  235 agtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgtt 306  Q
    |||||||||||||||||||||||||||  ||||||| ||||||||||||||  ||| ||| ||||| |||||    
T  27292455 agtttaatatcattgatctattagtttcatagtttagttaaacttagatcacgttacttatttaaagatgtt 27292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 305
Target Start/End: Original strand, 30920357 - 30920460
Alignment:
Q  202 ttctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaa 301  Q
    |||||||||  ||||| ||||||||||| |  ||||||||||| |||||| |||||||| |||| ||||||||| ||||||||  |||| ||| |||||     
T  30920357 ttctctaaaacatcatattaaatatcaaaagagagtttaatattattgatatattagttcactaatttatttaaccttagatcgcattacttatttaaag 30920456  T
Q  302 atgt 305  Q
    ||||    
T  30920457 atgt 30920460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 23620968 - 23621044
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||||||||| ||| ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  23620968 gagtttaatctaattgatctattaatttgctagtctatttaaacttagatcacattgcttatttaaatatgttcata 23621044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 7912957 - 7912874
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaata 317  Q
    ||||||||| | |||||| ||||||||  ||| | ||||||||||||||| | |||  |||||||||||||||||||| |||||    
T  7912957 gagtttaatctaattgatatattagttcgctaatctatttaaacttagataacattgcttaattaaaaatgttcataagaaata 7912874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 300
Target Start/End: Complemental strand, 24014600 - 24014514
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaa 300  Q
    |||||||||||||||| |   ||||||||   ||||||||||||||||  |||| |||||||| ||||||||||||| ||| |||||    
T  24014600 tcatgttaaatatcaaaattaagtttaatcatattgatctattagtttgttagtctatttaaatttagatcatattacttatttaaa 24014514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 214 - 300
Target Start/End: Original strand, 43024711 - 43024797
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaa 300  Q
    ||||||||||||| || |   |||||||| ||||| ||||||||||||   ||| ||||||||||||||||| |||||||| |||||    
T  43024711 tcatgttaaatattaaaacaaagtttaatctcattaatctattagtttggaagtctatttaaacttagatcacattatttatttaaa 43024797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 324
Target Start/End: Original strand, 7997327 - 7997416
Alignment:
Q  235 agtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatatattttt 324  Q
    |||||||| |||||||| |||||||||| || ||||||||||  |  ||||||||||||| |||||  ||||||||  |||||| |||||    
T  7997327 agtttaatttcattgatttattagtttattaatttatttaaatatgaatcatattatttatttaaacttgttcatatgaaatatgttttt 7997416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 246 - 311
Target Start/End: Original strand, 37244097 - 37244162
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    ||||||||||| ||| ||||||||||||||||||  |||| |||  ||| ||||||||||||||||    
T  37244097 attgatctatttgttcactagtttatttaaacttgcatcacattgcttatttaaaaatgttcataa 37244162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 36105850 - 36105754
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||| ||||||||| |  ||||||||| |||||||| ||||||||   |||| |||||||||||  |||| ||||  || |||||||||||||||    
T  36105850 tcatgtaaaatatcaaaagagagtttaatctcattgatatattagttcgttagtctatttaaacttgaatcacattaaatatttaaaaatgttcata 36105754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 324
Target Start/End: Complemental strand, 52264391 - 52264304
Alignment:
Q  237 tttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatatattttt 324  Q
    |||||| ||||| || ||||||||  |||||||||||||||||| |||| |||| ||| | ||| |||||||||  |||||| |||||    
T  52264391 tttaatctcattaatttattagttcgctagtttatttaaacttatatcacattacttattcaaagatgttcatatgaaatatgttttt 52264304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 11432454 - 11432544
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatatta 290  Q
    ||||||||||| | ||||||| | |||||| |  ||||||||| | |||||| ||||||||  ||| | ||||||||||||||||| ||||    
T  11432454 aattctctaaaaattcatgttgattatcaaaagagagtttaatttaattgatatattagttcgctaatctatttaaacttagatcacatta 11432544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 22320084 - 22319974
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||| |||||| | ||||||| | |||||| || |||||||||   |||||| ||||||||| ||||| |||||||||||| ||||  || |||| ||||    
T  22320084 aattttctaaaaattcatgttgattatcaaaaaagagtttaatcaaattgatatattagtttgctagtctatttaaacttatatcacgttgtttatttaa 22319985  T
Q  300 aaatgttcata 310  Q
    | || ||||||    
T  22319984 acatattcata 22319974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 34373711 - 34373617
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattattta 294  Q
    ||||||||||| | ||||||||||||| || | |||||| |||  |||| ||||||||||||  | || |||||||| ||| ||| |||||||||    
T  34373711 aattctctaaaaattcatgttaaatattaatagggagttgaatcacattaatctattagtttgttggtctatttaaatttatatcttattattta 34373617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 41819318 - 41819367
Alignment:
Q  235 agtttaatatcattgatctattagtttactagtttatttaaacttagatc 284  Q
    |||||||| | |||||| ||||||||| ||||| ||||||||||||||||    
T  41819318 agtttaatctaattgatatattagtttgctagtctatttaaacttagatc 41819367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 70
Target Start/End: Original strand, 4557187 - 4557215
Alignment:
Q  42 ctttttaaaagtttatttaacttaaaagg 70  Q
    |||||||||||||||||||||||||||||    
T  4557187 ctttttaaaagtttatttaacttaaaagg 4557215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 26660196 - 26660120
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||| |||||| |||||| | |||||| ||||||| ||| ||||| |||| ||| ||||| ||| |||||    
T  26660196 gagtttaatattattgatttattagctcactagtctatttaaccttggatcacattacttatttaaagatgatcata 26660120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 34510458 - 34510382
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||| ||||||||  ||||| ||||||||||||||| | |||  ||| ||||| |||||||||    
T  34510458 gagtttaatctaattgatatattagttcgctagtctatttaaacttagattacattgcttatttaaagatgttcata 34510382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 273
Target Start/End: Original strand, 38076341 - 38076398
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttattt 273  Q
    ||||||||||||||||||  |||||||||||||||  |||||||||| | |||| |||||    
T  38076341 tcatgttaaatatcaaga--gagtttaatatcattagtctattagttcattagtctattt 38076398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 316
Target Start/End: Original strand, 42237611 - 42237659
Alignment:
Q  268 ttatttaaacttagatcatattatttaattaaaaatgttcataaaaaat 316  Q
    |||||||||||||||| |||||| ||| ||||||||||| ||| |||||    
T  42237611 ttatttaaacttagattatattagttatttaaaaatgttaatataaaat 42237659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 318
Target Start/End: Original strand, 50528842 - 50528914
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatat 318  Q
    |||||| |||||||||  |||| |||||||||||| |||| | || ||| ||||| |||||||||| ||||||    
T  50528842 attgatatattagtttgatagtctatttaaacttaaatcagaatagttatttaaagatgttcataagaaatat 50528914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 31133073 - 31132977
Alignment:
Q  214 tcatgttaaatatcaagaag-gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||||||| ||| ||| ||||||||| ||||||||||||||||||  |||| ||||||||||||||||| |||| ||| ||||| |||||||||    
T  31133073 tcatgttaaata-caaaaagagagtttaatctcattgatctattagtttgatagtatatttaaacttagatcacattacttatttaaagatgttcata 31132977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 308
Target Start/End: Complemental strand, 43242148 - 43242041
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||||| |||| | |||||||||||||||| | |||| |||||  ||||||||||||||||| ||| | ||||||||||||||||| | || ||| ||||    
T  43242148 aattctttaaaaactcatgttaaatatcaaaagggagattaatcacattgatctattagttt-ctaatctatttaaacttagatcacactacttatttaa 43242050  T
Q  300 aaatgttca 308  Q
    | |||||||    
T  43242049 acatgttca 43242041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 242 - 310
Target Start/End: Original strand, 27483380 - 27483448
Alignment:
Q  242 tatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||||||||| | |||||| ||||||| |||| |||| |||| ||| ||||| |||||||||    
T  27483380 tatcattgatctattagctcactagtctatttaatcttaaatcacattacttatttaaatatgttcata 27483448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 34008404 - 34008504
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||||||||||   ||||||||||||| || | ||||||| ||||||||| | |||||||||  ||  |||||||||| | |||||||||| ||| ||||    
T  34008404 aattctctaaaatgtcatgttaaatattaaaagggagtttgatatcattggtttattagtttgttaacttatttaaacattgatcatattacttatttaa 34008503  T
Q  300 a 300  Q
    |    
T  34008504 a 34008504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 317
Target Start/End: Complemental strand, 36159266 - 36159162
Alignment:
Q  214 tcatgttaaatatc-aagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaa 312  Q
    |||||||||||||  || || ||||||||||| |||||| |||||| |  ||||  ||||||| ||| |||||||||| ||| ||||| ||||||||| |    
T  36159266 tcatgttaaatattgaaaaaagagtttaatataattgatatattagctcgctaggctatttaatcttggatcatattacttatttaaatatgttcatata 36159167  T
Q  313 aaata 317  Q
    |||||    
T  36159166 aaata 36159162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 310
Target Start/End: Complemental strand, 44890753 - 44890657
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||||||||| | |  ||||||||||||||||||||||||  |  ||||| ||||||| |||  |||| |||| ||| ||||| |||||||||    
T  44890753 tcatgttaaatatcgaaagagagtttaatatcattgatctattatctcgctagtctatttaaccttgaatcacattacttatttaaagatgttcata 44890657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 307
Target Start/End: Original strand, 33458639 - 33458732
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttc 307  Q
    |||||||||||| ||| |   |||||||| || ||||| |||||||| |||||| | |||||||||| |||| |||| ||  ||||||||||||    
T  33458639 tcatgttaaataccaaaagaaagtttaatttcgttgatatattagttcactagtctctttaaacttaaatcacattacttctttaaaaatgttc 33458732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 285
Target Start/End: Original strand, 43946676 - 43946761
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatca 285  Q
    ||||||||||| | |||| |||||| |||| | |||||||||| | |||||| |||||||||   ||| |||||||||||| ||||    
T  43946676 aattctctaaaaattcatattaaatgtcaaaatggagtttaatgttattgatttattagtttgtcagtctatttaaacttaaatca 43946761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 11836910 - 11837010
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||||||||||   | |||||||||||| | |  |||||||||||||||||| |||||| |  ||||| ||||||| ||| ||||| |||| ||| ||||    
T  11836910 aattctctaaaacttgatgttaaatatcgaaagagagtttaatatcattgatatattagctcgctagtctatttaacctttgatcacattacttatttaa 11837009  T
Q  300 a 300  Q
    |    
T  11837010 a 11837010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 21523861 - 21523925
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||| ||||||||  ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  21523861 attgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcata 21523925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 42323518 - 42323430
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatat 288  Q
    ||||||||| | |||||||||||||||||| |  || |||||| |||||||||||||||| | ||||| ||||||||| || |||||||    
T  42323518 aattctctataaaatcatgttaaatatcaaaagagaatttaatctcattgatctattagtatgctagtctatttaaacatatatcatat 42323430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 311
Target Start/End: Original strand, 11751627 - 11751738
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    |||||||||||   ||||||| | |||||| |  ||||||||| | |||||||||||||||| || || ||||||||||||||||| ||| ||||  |||    
T  11751627 aattctctaaaacctcatgttgattatcaaaagagagtttaatctaattgatctattagtttgctggtctatttaaacttagatcacattgtttatgtaa 11751726  T
Q  300 aaatgttcataa 311  Q
    | ||||||||||    
T  11751727 agatgttcataa 11751738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 23757292 - 23757387
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatatattttttaaca 329  Q
    ||||||| | ||||| |||||||||||  |||||||||||||||||||| || |||  ||| ||||| ||||||||| |||||| |||||| ||||    
T  23757292 gagtttagtctcatttatctattagttcgctagtttatttaaacttagaccacattcattatttaaagatgttcatataaaatagatttttaaaca 23757387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 235 - 310
Target Start/End: Complemental strand, 30562343 - 30562268
Alignment:
Q  235 agtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||||| |||||| ||||||||| ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  30562343 agtttaatataattgatatattagtttgctagtctatttaaacttagatcacattgattatttaaagatgttcata 30562268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 213 - 311
Target Start/End: Original strand, 10158005 - 10158103
Alignment:
Q  213 atcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    |||||||| | |||||| |  ||||||||| | ||||| |||||||||||||||| ||||||||||||||||| |||  ||| ||||| ||||| ||||    
T  10158005 atcatgttgattatcaaaatagagtttaatttaattgaactattagtttactagtctatttaaacttagatcacattgcttatttaaagatgttaataa 10158103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 3022965 - 3022911
Alignment:
Q  26 tagagaaggcttatgcctttttaaaagtttatttaacttaaaaggtcaggccaca 80  Q
    |||||||||| ||  | ||||||||||| ||||||||||||||||||||||||||    
T  3022965 tagagaaggcctaaacttttttaaaagtatatttaacttaaaaggtcaggccaca 3022911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 317
Target Start/End: Complemental strand, 41438419 - 41438337
Alignment:
Q  236 gtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaa-atgttcataaaaaata 317  Q
    ||||||| |||||  ||||||||||||| || |||||||||| || ||||||||||||| |||||| ||||| ||| ||||||    
T  41438419 gtttaatctcatttctctattagtttacgaggttatttaaacatatatcatattatttatttaaaatatgtttatacaaaata 41438337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 257
Target Start/End: Complemental strand, 35879732 - 35879675
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctatta 257  Q
    |||||||||||   |||||||||||||||| |||||||||||| |||||| |||||||    
T  35879732 aattctctaaaatgtcatgttaaatatcaaaaaggagtttaatctcattgctctatta 35879675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 47295753 - 47295829
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||| | |||| ||||||||  ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  47295753 gagtttaatataaatgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcata 47295829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 7287255 - 7287350
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaaaatatattttttaaca 329  Q
    ||||||||| | ||||| ||||||||| | ||||  |||||||||||||||| |||  ||| ||||| |||||||||| | |||| ||||| ||||    
T  7287255 gagtttaatttaattgaactattagttcattagtccatttaaacttagatcacattgcttatttaaagatgttcataagatatatgtttttaaaca 7287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 203 - 310
Target Start/End: Original strand, 23981410 - 23981517
Alignment:
Q  203 tctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaa 302  Q
    |||||||| | |||| |||||||||||   |||||||||| ||||| || ||||||||  ||||| |||||||| ||| |||| |||| ||| ||||| |    
T  23981410 tctctaaaaattcattttaaatatcaaatgggagtttaatctcatttatttattagttgtctagtctatttaaatttatatcacattacttatttaaaca 23981509  T
Q  303 tgttcata 310  Q
    || |||||    
T  23981510 tgatcata 23981517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 313
Target Start/End: Original strand, 25412324 - 25412403
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaa 313  Q
    ||||||||| | ||||| ||||||||||  ||||  ||||||| |||||||| |||| ||| ||||| ||||||||||||    
T  25412324 gagtttaatttaattgaactattagtttgttagtccatttaaatttagatcacattacttatttaaagatgttcataaaa 25412403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 2759121 - 2759011
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||| ||||| | ||||| ||| |||||| |  ||||||||| | |||||| ||||||||  ||| |  |||||||||||||||| ||| |||| ||||    
T  2759121 aattccctaaaaactcatggtaattatcaaaagagagtttaatctaattgatatattagttcgctaatcaatttaaacttagatcacattgtttatttaa 2759022  T
Q  300 aaatgttcata 310  Q
    | |||||||||    
T  2759021 atatgttcata 2759011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 310
Target Start/End: Original strand, 6213099 - 6213209
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| | ||||||||||||| || || ||||||| | | |||||||||||||||    |||  ||| |||||||||||| ||||  |  ||||    
T  6213099 aattctctaaaaattcatgttaaatataaaaaatgagtttattcttattgatctattagttcgtaagtcgattgaaacttagatcacattacatttttaa 6213198  T
Q  300 aaatgttcata 310  Q
    |||||||||||    
T  6213199 aaatgttcata 6213209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 642725 - 642802
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    ||||||||| | ||||| ||||||||| ||||||  |||||||||||||||| |||  ||| ||| | ||||||||||    
T  642725 gagtttaatttaattgaactattagttcactagtccatttaaacttagatcacattgcttatttagagatgttcataa 642802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 311
Target Start/End: Original strand, 3839366 - 3839443
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    ||||||||| | ||||| |||||||||   |||||| ||||||||||||||| |||  ||| ||||| ||||||||||    
T  3839366 gagtttaatctaattgaactattagttcgttagtttgtttaaacttagatcacattgcttatttaaagatgttcataa 3839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 315
Target Start/End: Complemental strand, 11862648 - 11862547
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataaaa 313  Q
    ||||||||||||| || | |||| ||||||| |||||| |||||||||  |||| |||||||| ||| |||| |||| ||| || || ||| ||||| ||    
T  11862648 tcatgttaaatatgaaaagggagattaatataattgatatattagtttgttagtctatttaaatttatatcacattaattatttgaatatgctcatataa 11862549  T
Q  314 aa 315  Q
    ||    
T  11862548 aa 11862547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 18379255 - 18379296
Alignment:
Q  216 atgttaaatatcaagaaggagtttaatatcattgatctatta 257  Q
    |||||||||||||| | |||||||||||||| ||||||||||    
T  18379255 atgttaaatatcaaaagggagtttaatatcaatgatctatta 18379296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 4362272 - 4362196
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | ||| || |||||||  |||||| |||||||||||| |||| |||  ||| |||||||||||||||    
T  4362272 gagtttaatctaatttatatattagtccactagtctatttaaacttaaatcacattgcttatttaaaaatgttcata 4362196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 202 - 310
Target Start/End: Original strand, 4402201 - 4402309
Alignment:
Q  202 ttctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaa 301  Q
    ||||||||| |  ||||||||||||||| |  || || |||  ||||||| |||||||||  |||||||||||| ||||  ||| |||| ||  ||||||    
T  4402201 ttctctaaaaatccatgttaaatatcaaaagagaattcaatcacattgatttattagtttgttagtttatttaaccttatttcacattacttgtttaaaa 4402300  T
Q  302 atgttcata 310  Q
    |||||||||    
T  4402301 atgttcata 4402309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 45339136 - 45339072
Alignment:
Q  246 attgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||| ||||||||| ||||| |||||||||||||||| ||||  ||| | ||| |||||||||    
T  45339136 attgatatattagtttgctagtctatttaaacttagatcgtattgcttattaaaagatgttcata 45339072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 311
Target Start/End: Complemental strand, 21019829 - 21019752
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcataa 311  Q
    ||||||||| | |||||||||||||||  ||||| ||||||||||||||||| |||  ||| ||||| ||||||||||    
T  21019829 gagtttaatttaattgatctattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcataa 21019752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 22738673 - 22738597
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | ||| || |||||||| |||||| |||||||||||||||||||||  ||| ||||| |||||||||    
T  22738673 gagtttaatctaattaatatattagttcactagtctatttaaacttagatcatattccttatttaaagatgttcata 22738597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 9552596 - 9552506
Alignment:
Q  219 ttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    |||||||| || |||| ||||||| |||||  ||||||||||   |||||||||||||||||||||| ||| |||| ||||| |||||||||    
T  9552596 ttaaatataaaaaagg-gtttaatctcattcgtctattagttcgttagtttatttaaacttagatcacattgtttatttaaatatgttcata 9552506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 200 - 329
Target Start/End: Original strand, 10710114 - 10710243
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| |||||| || | |||||| |  ||||||||| | |||||| ||||||||| ||||| || |||||| |||| || |||  ||| | ||    
T  10710114 aattctctaaaaaatcatcttgattatcaaaatagagtttaatttaattgatatattagtttgctagtctacttaaacatagagcacattgcttattaaa 10710213  T
Q  300 aaatgttcataaaaaatatattttttaaca 329  Q
    | ||||||||| ||||||| ||||| ||||    
T  10710214 atatgttcatataaaatatgtttttaaaca 10710243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 30469446 - 30469370
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||| ||||||||| ||||| |||| |||||||||||| |||  ||| ||||| |||||||||    
T  30469446 gagtttaatgtaattgatatattagtttgctagtctattcaaacttagatcacattgcttatttaaagatgttcata 30469370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 35458859 - 35458783
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||||||||||||||||| |  ||||| |||||||  || ||||| |||| ||| ||||||| |||||||    
T  35458859 gagtttaatatcattgatctattagctcgctagtctatttaactttggatcacattacttatttaaaaacgttcata 35458783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 40691240 - 40691164
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | |||||| ||||||||  ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  40691240 gagtttaatctaattgatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcata 40691164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 31587660 - 31587710
Alignment:
Q  26 tagagaaggcttatgcctttttaaaagtttatttaacttaaaaggtcaggc 76  Q
    |||||||||  ||||| |||||||||| ||||||| |||||||||||||||    
T  31587660 tagagaaggtctatgcttttttaaaagcttatttagcttaaaaggtcaggc 31587710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 282
Target Start/End: Complemental strand, 33437373 - 33437291
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttaga 282  Q
    ||||||||||| | | ||||||||||| || | || ||| ||| ||||| || ||||||||| ||||| ||||||||||||||    
T  33437373 aattctctaaaaatttatgttaaatataaatagggggttgaatctcattaatatattagttttctagtctatttaaacttaga 33437291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 38996091 - 38996197
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| | ||||||| | |||||| |   |||||||| | |||||| |||||||| |||||| |||||||||||| |||  |||  ||| ||||    
T  38996091 aattctctaaaaattcatgttgattatcaaaagaaagtttaatctaattgatatattagttcactagtctatttaaacttacatcgcattgcttatttaa 38996190  T
Q  300 aaatgtt 306  Q
    |||||||    
T  38996191 aaatgtt 38996197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 306
Target Start/End: Original strand, 44602113 - 44602219
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaa 299  Q
    ||||||||||| | ||||||| | |||||| |   |||||||| | |||||| |||||||| |||||| |||||||||||| |||  |||  ||| ||||    
T  44602113 aattctctaaaaattcatgttgattatcaaaagaaagtttaatctaattgatatattagttcactagtctatttaaacttacatcgcattgcttatttaa 44602212  T
Q  300 aaatgtt 306  Q
    |||||||    
T  44602213 aaatgtt 44602219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 16998315 - 16998278
Alignment:
Q  43 tttttaaaagtttatttaacttaaaaggtcaggccaca 80  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  16998315 tttttaaaagtctatttaacttaataggtcaggccaca 16998278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Complemental strand, 17006364 - 17006323
Alignment:
Q  269 tatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  17006364 tatttaaacttagatcatattgtttacttaaagatgttcata 17006323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 310
Target Start/End: Original strand, 17570884 - 17570925
Alignment:
Q  269 tatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  17570884 tatttaaacttagatcatattgtttacttaaagatgttcata 17570925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 31587981 - 31588057
Alignment:
Q  234 gagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| | ||| || ||||||||  ||||| ||||||||||||||||| |||  ||| ||||| |||||||||    
T  31587981 gagtttaatcttattaatatattagttcgctagtctatttaaacttagatcacattgcttatttaaagatgttcata 31588057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 310
Target Start/End: Original strand, 11006 - 11080
Alignment:
Q  236 gtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||||||| ||| || |||||||||  |||| |||||||||||||||||||||  ||| ||||| |||||||||    
T  11006 gtttaatataatttatatattagtttgatagtctatttaaacttagatcatattgcttatttaaagatgttcata 11080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 282
Target Start/End: Original strand, 10265803 - 10265871
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttaga 282  Q
    ||||||||||||||||   | |||||||| |||||||||||| ||||| ||||| |||| |||||||||    
T  10265803 tcatgttaaatatcaaatggaagtttaatctcattgatctataagtttgctagtatattgaaacttaga 10265871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 290
Target Start/End: Complemental strand, 10667657 - 10667581
Alignment:
Q  214 tcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatatta 290  Q
    ||||||| |||||||| |  ||||||| | | |||||||||| ||||| ||||| ||||||||||||||||| ||||    
T  10667657 tcatgttgaatatcaaaagagagtttattctaattgatctatgagtttgctagtctatttaaacttagatcacatta 10667581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 310
Target Start/End: Complemental strand, 2803944 - 2803833
Alignment:
Q  200 aattctctaaataat-catgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatattatttaatta 298  Q
    ||||||||||| ||| ||||||||||||||| | || ||||||| || ||  | |||||| || ||||| |||||||| |||||||| |||| ||| |||    
T  2803944 aattctctaaaaaatacatgttaaatatcaaaagggggtttaatctctttagtttattagcttgctagtatatttaaaattagatcacattacttattta 2803845  T
Q  299 aaaatgttcata 310  Q
    || || ||||||    
T  2803844 aagatattcata 2803833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 290
Target Start/End: Original strand, 9104381 - 9104471
Alignment:
Q  200 aattctctaaataatcatgttaaatatcaagaaggagtttaatatcattgatctattagtttactagtttatttaaacttagatcatatta 290  Q
    ||||||||||| | ||| |||||||||  | | |||||| ||| |||||  ||||||||||| ||||| ||||| ||| ||||||||||||    
T  9104381 aattctctaaaaattcacgttaaatatagatagggagttgaatctcattagtctattagtttgctagtatatttgaacgtagatcatatta 9104471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Complemental strand, 33011667 - 33011614
Alignment:
Q  257 agtttactagtttatttaaacttagatcatattatttaattaaaaatgttcata 310  Q
    ||||| ||||| |||||||||||| |||| |||||||| ||||| |||||||||    
T  33011667 agttttctagtctatttaaacttatatcacattatttatttaaagatgttcata 33011614  T

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