View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_low_4 (Length: 472)
Name: NF1686_low_4
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Complemental strand, 40381551 - 40381120
Alignment:
| Q |
10 |
ataattctaacacataattggctcaaaactagcacatactaactaaaatctaattatatttttccttctcctaggtttttggattaacaactagcactgt |
109 |
Q |
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| T |
40381551 |
ataattctaacacttaattggctcaaaactagcacatactaactaaaatctaattatatttttccttctcctaggtttttggattaacaactagcactgt |
40381452 |
T |
|
| Q |
110 |
tacaaaatttaataaaccagatacagaaaaaataaaatagttctcctgttaatatttctaaaacttagcaacggaattataaacaaattttgtattttgt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381451 |
tacaaaatttaataaaccagatacagaaaaaataaaatagttctcctgttaatatttctaaaacttagcaacggaattataaacaaattttgtattttgt |
40381352 |
T |
|
| Q |
210 |
ctttaattatggccgccaagtgtagaac-nnnnnnnnnatcttaaccatctggagtttgcctgaaaggtaaataaagtggtctgactaagaattgttctc |
308 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381351 |
ctttaattatggccgccaagtgtagaacttttttttttatcttaaccatccagagtttgcctgaaaggtaaataaagtggtctgactaagaattgttctc |
40381252 |
T |
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| Q |
309 |
gtcaggatttgaactcgaatacttccgaacaattcacttttaactagagtttatcaaccacttgagttctcaatcatttcatttccttaaatttaagcat |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||| |
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| T |
40381251 |
gtcaggatttgaactcgaatacttccgaacaattcacttttaactagagttcatcaaccacttgagctctcaat-----------cttaaatttaagcat |
40381163 |
T |
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| Q |
409 |
agactattatctatccatgtattgataatttatttttgcatca |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40381162 |
agactattatctatccatgtattgataatttatttttgcatca |
40381120 |
T |
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