View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_low_5 (Length: 402)
Name: NF1686_low_5
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 3343096 - 3342898
Alignment:
| Q |
18 |
agcaaatcttcatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacacccaaagcccggcttggatac---att |
114 |
Q |
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| T |
3343096 |
agcaaatcttaatgtaaatttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacacccaaagtccggcttggatacataatt |
3342997 |
T |
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| Q |
115 |
taagtcaaataaaagaagagggaatgatataagataagataaatgtggaaatatgtttctacgtagatttaattgtaaacattatacaagataagatact |
214 |
Q |
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| T |
3342996 |
taagtcaaataaaagaagagggaatgat-----ataagataaatgtggaaatatgtttctacgtagatttaattgtaaacattatacaagataagatact |
3342902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 222 - 393
Target Start/End: Complemental strand, 3342855 - 3342687
Alignment:
| Q |
222 |
tttgtcctctcttcaattctctttctttgtttatgtattgtgatgagaggttaacgtttgggattcaaatgtttatggattatgtttgtctataggtggt |
321 |
Q |
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| T |
3342855 |
tttgtcctctcttcaattctctttctttgtttatgtattgtgataagaggttaacgtttgggattcaaatgtttatggattatgtttgtctata---ggt |
3342759 |
T |
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| Q |
322 |
tgtgaaatattaggattgttattgatatggtggatgtgtaagaaaataatgttccaaaacatgtagtataat |
393 |
Q |
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| T |
3342758 |
tgtgaaatagtaggattgttattgatatggtggatgtgtaagaaaataatgttccaaaacatgtagtataat |
3342687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 3367565 - 3367479
Alignment:
| Q |
37 |
ttcccattcaaacataatagtaggataaatttcaccggaatgaggttcgtgacacccaaagcccggcttggatacatttaagtcaaa |
123 |
Q |
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|||||||||||||||||||||| |||| ||||||| ||||||||||| ||||||| |||| ||||||||| ||||||| ||||| |
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| T |
3367565 |
ttcccattcaaacataatagtaagataggtttcaccagaatgaggttcatgacacctaaagttgggcttggattcatttaaatcaaa |
3367479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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