View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1686_low_7 (Length: 321)

Name: NF1686_low_7
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1686_low_7
NF1686_low_7
[»] chr3 (2 HSPs)
chr3 (188-321)||(2590072-2590205)
chr3 (18-98)||(2590333-2590413)


Alignment Details
Target: chr3 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 188 - 321
Target Start/End: Complemental strand, 2590205 - 2590072
Alignment:
Q  188 aatattcttcataaaccttagacgacagacatatcagattcactcttcacatatatgcttaacactactatgtaggcatcccaaagaataccttatgtag 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  2590205 aatattcttcataaaccttagacgacagacatatcagattcactcttcacatatatgcttaatactactatgtaggcatcccaaagaacaccttatgtag 2590106  T
Q  288 actattaaaaacaagacaaacttaactaaagaac 321  Q
    |||||| ||||||| |||||||||||||||||||    
T  2590105 actattgaaaacaacacaaacttaactaaagaac 2590072  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 2590413 - 2590333
Alignment:
Q  18 taaagtacattaagtttgcttcaattttcttttatattaattaaagcatagtaattagtaggaaaagtaagttactatgac 98  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2590413 taaagtatattaagtttgcttcaattttcttttatattaattaaagcatagtaaatagtaggaaaagtaagttactatgac 2590333  T

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