View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_low_8 (Length: 317)
Name: NF1686_low_8
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 18 - 131
Target Start/End: Complemental strand, 18157415 - 18157293
Alignment:
| Q |
18 |
aaaggcttagcataaagggtaaaaacagagacatgtctctgtttcggatcattctttcaaataaagaagaaatt---------tcagcttctgaagccat |
108 |
Q |
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| T |
18157415 |
aaaggcttagcataaagggtaaaaacagagacatgtctctgtttcggatcattctttcaaataaagaagaaatttcagaaatttcagcttctgaagccat |
18157316 |
T |
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| Q |
109 |
caaatcaattcaaaacagcaaag |
131 |
Q |
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| T |
18157315 |
caaatcaattcaaaacagcaaag |
18157293 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 214 - 298
Target Start/End: Complemental strand, 18157210 - 18157126
Alignment:
| Q |
214 |
tatagagagataaaagaacgttgtggaaggatctggaacaacatattacgtgtgttgtgaaatttcggtgtatttgttgcgatat |
298 |
Q |
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| T |
18157210 |
tatagagagaaaaaagaacgtcgtggaaggatctggaacaacatattacgtgtgttgtgaaatttcggtgtatttgttgcgatat |
18157126 |
T |
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