View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1686_low_9 (Length: 244)
Name: NF1686_low_9
Description: NF1686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1686_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 193
Target Start/End: Complemental strand, 8083748 - 8083559
Alignment:
| Q |
11 |
cacagacttaagtttttatcatgtaccttatccctttgtttg-cgggtacctga-----gatcaaattcacaaataaatttgaaattttggagggagaaa |
104 |
Q |
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| T |
8083748 |
cacaaacttaaatttttgtcatgtaccttatccctttgtttgtcgggtacctgaagagagatcaaattcacaaataaatttgaaattttgaagggagaaa |
8083649 |
T |
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| Q |
105 |
gacacgttagtcc-tctccacatttttctgtttggttgtcctttcatgcatttttcgtatgtgctatggattctgttacatacacttctt |
193 |
Q |
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| T |
8083648 |
gacacgttagtccctctccacatttttctgtttggttgtcctttcatgcatttttcgtatgtgctatggattctgttacatacacttctt |
8083559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 185 - 230
Target Start/End: Complemental strand, 8083391 - 8083346
Alignment:
| Q |
185 |
acacttctttcactgctatttcatttcaccaacaaatgcaatacct |
230 |
Q |
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| T |
8083391 |
acacttctttcactgctatttcatttcaccaacaaatgcaatacct |
8083346 |
T |
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