View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687-Insertion-10 (Length: 205)
Name: NF1687-Insertion-10
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687-Insertion-10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 7 - 205
Target Start/End: Complemental strand, 35521107 - 35520909
Alignment:
| Q |
7 |
aacatcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttataaacttccacaaaaacatccttcaaatagtaaccccatttgtaa |
106 |
Q |
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| T |
35521107 |
aacatcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttataaacttccacaaaaacatccttcaaatagtaaccccatttgtaa |
35521008 |
T |
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| Q |
107 |
tatctttcatcattaatatacaggtcaaccacatagagacttccatcatactctactaatttctttttgttttcacaagcattcacccttatatgccca |
205 |
Q |
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| T |
35521007 |
tatctttcatcattaatatacaggtcaaccacatagagacttccatcatactctactaatttcttcttgttttcgcaagcattcacccttatatgccca |
35520909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 117; Significance: 8e-60; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 7 - 203
Target Start/End: Original strand, 38813258 - 38813454
Alignment:
| Q |
7 |
aacatcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttataaacttccacaaaaacatccttcaaatagtaaccccatttgtaa |
106 |
Q |
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| T |
38813258 |
aacatcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttataaacttccacaaaaacggccttcaagaagtaaccccttttgtaa |
38813357 |
T |
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| Q |
107 |
tatctttcatcattaatatacaggtcaaccacatagagacttccatcatactctactaatttctttttgttttcacaagcattcacccttatatgcc |
203 |
Q |
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| T |
38813358 |
tacctttcatcattgatatataaatcaaccacatatagacctccatcatactctactaattgcttcttgtttatgttagaattcacccttatatgcc |
38813454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 38825162 - 38825319
Alignment:
| Q |
10 |
atcacccaaatcttttacttttaaccatttaccccattcttgatcaagcttataaacttccacaaaaacatccttcaaatagtaaccccatttgtaatat |
109 |
Q |
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| T |
38825162 |
atcacccaaatcttttacatataaccatttaccccattcttgatcaagcttatatactttcacacgaatagccttcaagaagtgacccaatttgtaaaac |
38825261 |
T |
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| Q |
110 |
ctttcatcattaatatacaggtcaaccacatagagacttccatcatactctactaatt |
167 |
Q |
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| T |
38825262 |
ctttcatcgtcaatatacatatcaaccacacagagatttccatcaaactctactaatt |
38825319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 171
Target Start/End: Original strand, 38810664 - 38810737
Alignment:
| Q |
98 |
catttgtaatatctttcatcattaatatacaggtcaaccacatagagacttccatcatactctactaatttctt |
171 |
Q |
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| T |
38810664 |
catttttaatacctttcatcattaatatacaaatcaaccacataaagactttcattgtactctactaatttctt |
38810737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 35548574 - 35548704
Alignment:
| Q |
32 |
aaccatttaccccattcttgatcaagcttataaacttccacaaaaacatccttcaaatagtaaccccatttgtaatatctttcatcattaatatacaggt |
131 |
Q |
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| T |
35548574 |
aaccatttaccccattcttgatcaagcttataaattttcacaaaaacaaccttgtataaatattgc---ttatgatagcttttatcattaatatacaaat |
35548670 |
T |
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| Q |
132 |
caaccacatagagacttccatcatactctactaa |
165 |
Q |
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| T |
35548671 |
caaccacatagagatttccatcatattctactaa |
35548704 |
T |
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