View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687-Insertion-12 (Length: 427)
Name: NF1687-Insertion-12
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687-Insertion-12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 7 - 427
Target Start/End: Complemental strand, 32064868 - 32064448
Alignment:
| Q |
7 |
acttttgacagttgggcagtattcaggcctcagtatatgacagggtctggaaacaacaaagactgtgaggagtggttctttgacagtaagtgggaaaatt |
106 |
Q |
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| T |
32064868 |
acttttgacagttgggcagtattcaggcctcagtatatgacagggtctggaaacaacaaagactgtgaggagtggttctttgacagtaagtgggaaaatt |
32064769 |
T |
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| Q |
107 |
cttaaaacaagctttattttaaaactctaatccacatgaagcnnnnnnnnactctgaaatttttatgctaatttagaacttctaaaagaaatgtatattg |
206 |
Q |
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|||||| |||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064768 |
cttaaagcaagctttattttaaacctctaatccatatgaagcttttttttactctgaaatttttatgctaatttagaacttctaaaagaaatgtatattg |
32064669 |
T |
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| Q |
207 |
ccatttgtagggattgttcgggacagacctgtgctaattcctggttcaggattgcaactcactaacatatctcatgttaaagacttgtcttcaatgttga |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32064668 |
ccatttgtagggattgttcgggacagacctgtgctaattcctggttcaggattgcaactcactaacatatctcatgttaaagacttgtcttcaatgttga |
32064569 |
T |
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| Q |
307 |
ctctagctgttgagaacccggatgctgcaaatcatagcattttcaactgtgtgagtgaccgtgcggtgactctaaatggaatagctaaactatgcgctca |
406 |
Q |
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| T |
32064568 |
ctctagctgttgagaacccggatgctgcaaatcatagcattttcaactgtgtgagtgaccgtgcggtgactctaaatggaatagctaaactatgcgctca |
32064469 |
T |
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| Q |
407 |
agctgcaggacgccctgttaa |
427 |
Q |
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| T |
32064468 |
agctgcaggacgccctgttaa |
32064448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 275 - 427
Target Start/End: Complemental strand, 51280848 - 51280696
Alignment:
| Q |
275 |
atctcatgttaaagacttgtcttcaatgttgactctagctgttgagaacccggatgctgcaaatcatagcattttcaactgtgtgagtgaccgtgcggtg |
374 |
Q |
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|||||||||||||||||| || || ||| ||||||||||||||||||| | |||||||||| |||| ||||||||||||| |||||||||| ||| ||| |
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| T |
51280848 |
atctcatgttaaagacttatcgtcgatgctgactctagctgttgagaattcagatgctgcaagtcatggcattttcaactgcgtgagtgaccttgcagtg |
51280749 |
T |
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| Q |
375 |
actctaaatggaatagctaaactatgcgctcaagctgcaggacgccctgttaa |
427 |
Q |
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| T |
51280748 |
attctaaatggaatagctaaactacgtacttaggctgcagggcgccctgttaa |
51280696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 24917744 - 24917798
Alignment:
| Q |
74 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
129 |
Q |
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| T |
24917744 |
aggagtggttctttgatagtaagtgggaaaattc-taaaccaagctttattttaaa |
24917798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 1081170 - 1081224
Alignment:
| Q |
74 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
129 |
Q |
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| T |
1081170 |
aggagtggttctttgatagtaagtgggaaaattc-taaaccaaattttattttaaa |
1081224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 7744795 - 7744849
Alignment:
| Q |
74 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
129 |
Q |
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| T |
7744795 |
aggagtggttctctgatagtaagtgggaaaattc-taaaccaagctttattttaaa |
7744849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 15339730 - 15339784
Alignment:
| Q |
74 |
aggagtggttctttgacagtaagtgggaaaattcttaaaacaagctttattttaaa |
129 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| ||| |||||||||||| |
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| T |
15339730 |
aggagtggttctttgatagtaagtgggaaaattc-taaaccaaactttattttaaa |
15339784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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