View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687-Insertion-6 (Length: 247)

Name: NF1687-Insertion-6
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687-Insertion-6
NF1687-Insertion-6
[»] chr8 (3 HSPs)
chr8 (24-197)||(31033515-31033687)
chr8 (84-142)||(13031592-13031650)
chr8 (213-247)||(31033685-31033719)
[»] chr5 (1 HSPs)
chr5 (10-243)||(41386051-41386285)
[»] chr6 (2 HSPs)
chr6 (80-243)||(27848857-27849019)
chr6 (78-158)||(11644739-11644819)
[»] chr4 (7 HSPs)
chr4 (81-243)||(4402458-4402619)
chr4 (80-120)||(14293030-14293070)
chr4 (80-120)||(14309079-14309119)
chr4 (75-150)||(9789320-9789395)
chr4 (80-110)||(55237394-55237424)
chr4 (83-136)||(18318007-18318060)
chr4 (83-136)||(18400619-18400672)
[»] scaffold0535 (1 HSPs)
scaffold0535 (81-240)||(8143-8301)


Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 24 - 197
Target Start/End: Original strand, 31033515 - 31033687
Alignment:
Q  24 tggctacacttggtttcagccccgcacagacacggtatctcattttaattttaatttctcttggtcttggatttggaaattaaagctgccggaaaaactc 123  Q
    |||||||||||| || | ||||| |||||||||  ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||| ||||||||    
T  31033515 tggctacacttgtttgctgccccacacagacacaatatctcattttaattctaattcctcttggtcttggatttggaaattaaagcttccgaaaaaactc 31033614  T
Q  124 aagtttcttttttggttagcctgccacgactctgtccctactctcttttttctcaaaccatagaaatattgcac 197  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||    
T  31033615 aagtttcttttttggttagcctaccacgactctgtccctactctctttttgctc-aaccatagaaatattgcac 31033687  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 13031592 - 13031650
Alignment:
Q  84 ttggtcttggatttggaaattaaagctgccggaaaaactcaagtttcttttttggttag 142  Q
    |||||||||||||||||||||||||||  || ||||  | |||||||||||||||||||    
T  13031592 ttggtcttggatttggaaattaaagctttcgaaaaaggttaagtttcttttttggttag 13031650  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 213 - 247
Target Start/End: Original strand, 31033685 - 31033719
Alignment:
Q  213 cacgttgcggtcttgatgatgagactttcctccat 247  Q
    ||||||| |||||||||||||||||||||||||||    
T  31033685 cacgttgtggtcttgatgatgagactttcctccat 31033719  T

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Target: chr5 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 243
Target Start/End: Original strand, 41386051 - 41386285
Alignment:
Q  10 tacactaccaagagtggctacacttggtttcagccccgcacagacacggtatctcattttaattttaatt--tctcttggtcttggatttggaaattaaa 107  Q
    |||||||| ||||||| ||||| |||||| |   ||| |||| ||||| || |||||||||||| || ||  | | ||||||||||||||||||||||||    
T  41386051 tacactactaagagtgactacatttggttgctatcccacacaaacacgataactcattttaattctatttcttatattggtcttggatttggaaattaaa 41386150  T
Q  108 gctgccggaaaaactcaagtttcttttttggttagcctgccacgactctgtccctactctcttttttctcaaaccatagaaatattgcaccttcagctac 207  Q
    ||| | |||||| | |||||||||||||||||| ||||||||| ||| || |||||||||| |||| ||| |||||||||||||||||||| || ||||     
T  41386151 gcttctggaaaagcacaagtttcttttttggttggcctgccacaactgtgaccctactctccttttactc-aaccatagaaatattgcaccatcggctat 41386249  T
Q  208 ttgctcacgttgcggtcttgatgatgagactttcct 243  Q
    ||| || ||||| ||||||||||| |||||||||||    
T  41386250 ttgttctcgttgtggtcttgatgacgagactttcct 41386285  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 243
Target Start/End: Complemental strand, 27849019 - 27848857
Alignment:
Q  80 tctcttggtcttggatttggaaattaaagctgccggaaaaactcaagtttcttttttggttagcctgccacgactctgtccctactctcttttttctcaa 179  Q
    |||| |||||||||||||||||||||||||| || ||||| || ||||| || ||||| || || |||||| | |||  |||||||||  |||| ||| |    
T  27849019 tctcgtggtcttggatttggaaattaaagcttcctgaaaagcttaagttcctcttttgcttggcttgccacaattcttcccctactcttcttttactc-a 27848921  T
Q  180 accatagaaatattgcaccttcagctacttgctcacgttgcggtcttgatgatgagactttcct 243  Q
    |||||| ||||||||| ||||| |||  |||| | ||||| ||| | || ||||||||||||||    
T  27848920 accatataaatattgctccttcggctgtttgccctcgttgtggtttggaagatgagactttcct 27848857  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 78 - 158
Target Start/End: Original strand, 11644739 - 11644819
Alignment:
Q  78 tttctcttggtcttggatttggaaattaaagctgccggaaaaactcaagtttcttttttggttagcctgccacgactctgt 158  Q
    ||||||||||||||||||||| ||||||  ||||||| ||||  ||||||||||  |||||||||| || ||| |||||||    
T  11644739 tttctcttggtcttggatttgaaaattactgctgccgaaaaagatcaagtttctcatttggttagcttgtcacaactctgt 11644819  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 243
Target Start/End: Original strand, 4402458 - 4402619
Alignment:
Q  81 ctcttggtcttggatttggaaattaaagctgccggaaaaactcaagtttcttttttggttagcctgccacgactctgtccctactctcttttttctcaaa 180  Q
    ||||||||| |||||||||||||||   || || ||||| |  |  |||||||||||||| || |||||| ||| ||||||||||||  |||| ||| ||    
T  4402458 ctcttggtcatggatttggaaattactacttcctgaaaagcatagatttcttttttggttggcttgccacaactatgtccctactcttcttttgctc-aa 4402556  T
Q  181 ccatagaaatattgcaccttcagctacttgctcacgttgcggtcttgatgatgagactttcct 243  Q
    ||||| ||||||||| |||||  ||   ||||| ||||||| |||||| ||||||||||||||    
T  4402557 ccatataaatattgctccttcgcctctatgctcccgttgcgatcttgaagatgagactttcct 4402619  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 14293030 - 14293070
Alignment:
Q  80 tctcttggtcttggatttggaaattaaagctgccggaaaaa 120  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  14293030 tctcttggtcttggatttggaaattaaagctcccagaaaaa 14293070  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 14309079 - 14309119
Alignment:
Q  80 tctcttggtcttggatttggaaattaaagctgccggaaaaa 120  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  14309079 tctcttggtcttggatttggaaattaaagctcccagaaaaa 14309119  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 150
Target Start/End: Original strand, 9789320 - 9789395
Alignment:
Q  75 taatttctcttggtcttggatttggaaattaaagctgccggaaaaactcaagtttcttttttggttagcctgccac 150  Q
    |||| ||||||||||||||||||||||| |||| |  ||||||||| |||| ||| || ||||||| || ||||||    
T  9789320 taatatctcttggtcttggatttggaaactaaaacctccggaaaaaatcaaattttttatttggttggcttgccac 9789395  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 110
Target Start/End: Complemental strand, 55237424 - 55237394
Alignment:
Q  80 tctcttggtcttggatttggaaattaaagct 110  Q
    |||||||||||||||||||||||||||||||    
T  55237424 tctcttggtcttggatttggaaattaaagct 55237394  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 18318060 - 18318007
Alignment:
Q  83 cttggtcttggatttggaaattaaagctgccggaaaaactcaagtttctttttt 136  Q
    ||||||||||| ||||||| ||  |||||||||||||| |||| ||||||||||    
T  18318060 cttggtcttgggtttggaagttttagctgccggaaaaaatcaaatttctttttt 18318007  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 18400619 - 18400672
Alignment:
Q  83 cttggtcttggatttggaaattaaagctgccggaaaaactcaagtttctttttt 136  Q
    ||||||||||| ||||||| ||  |||||||||||||| |||| ||||||||||    
T  18400619 cttggtcttgggtttggaagttttagctgccggaaaaaatcaaatttctttttt 18400672  T

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Target: scaffold0535 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 81 - 240
Target Start/End: Original strand, 8143 - 8301
Alignment:
Q  81 ctcttggtcttggatttggaaattaaagctgccggaaaaactcaagtttcttttttggttagcctgccacgactctgtccctactctcttttttctcaaa 180  Q
    |||||||||||| |||||||||||||| ||   |||||| |  || |||||||||||||| || |||||| |||||  || ||||||| |||| ||| ||    
T  8143 ctcttggtcttgcatttggaaattaaaacttttggaaaagcataaatttcttttttggttggcttgccacaactcttaccatactctccttttgctc-aa 8241  T
Q  181 ccatagaaatattgcaccttcagctacttgctcacgttgcggtcttgatgatgagacttt 240  Q
    ||||| ||||||||| || ||  ||  ||| || ||||| |||| ||| |||||||||||    
T  8242 ccatataaatattgccccatcgcctctttgttcccgttgtggtcctgaagatgagacttt 8301  T

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