View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1687-Insertion-8 (Length: 258)
Name: NF1687-Insertion-8
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1687-Insertion-8 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 4083503 - 4083251
Alignment:
| Q |
6 |
catcttcttcttcatcaggtacacatttttcacctaatataattgttttcatccaaatagattcatcaggttttagcttctctttattccctatatcatt |
105 |
Q |
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| T |
4083503 |
catcttcttcttcatcaggtacacatttttcacctaatataattgttttcatccaaatagattcatcaggttttagcttttctctattccctatatcatt |
4083404 |
T |
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| Q |
106 |
ttcctcttttttatcccaatttcttgctaaagataaacttcttggcatttttatactcaatttaaacgatagcctacgttcagaagttgtccgtttcaca |
205 |
Q |
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| T |
4083403 |
ttcctcttttttatcccaatttcttgctaaagataaactccttggcatttttatactcaatttaaacgatagcctacgttcggaagttgtccttttcaca |
4083304 |
T |
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| Q |
206 |
aattcggaagctttgttggcgttgttgggttgttgcaatgatggtggaagagg |
258 |
Q |
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| T |
4083303 |
aattctgaagctttgttggtgttgttgggttgttgcattgatggtgggagagg |
4083251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 48202593 - 48202651
Alignment:
| Q |
11 |
tcttcttcatcaggtacacatttttcacctaatataattgttttcatccaaatagattc |
69 |
Q |
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| T |
48202593 |
tcttcttcatcaggaacacatttatcacctaatataattgttttcatccaaacagattc |
48202651 |
T |
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