View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1687-Insertion-9 (Length: 416)

Name: NF1687-Insertion-9
Description: NF1687
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1687-Insertion-9
NF1687-Insertion-9
[»] chr2 (1 HSPs)
chr2 (6-416)||(19091917-19092330)


Alignment Details
Target: chr2 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 6 - 416
Target Start/End: Original strand, 19091917 - 19092330
Alignment:
Q  6 cactaaccagctattacatcaatcatttttacctactaactttgtaaccaagcaaaaatttcaagttccatgcaagtggttctcgtaaaccattcaaatt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  19091917 cactaaccagctattacatcaatcatttttacctactaactttgtaaccaagcaaaaattacaagttccatgcaagtggttctcgtaaaccattcaaatt 19092016  T
Q  106 tcctatgaatgaagcaacggaattacaagaaaaccatgagccctaagccacttaaatttgtggaattatgtctatatcaactggttctaggttgttgctt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  19092017 tcctatgaatgaagcaacggaattacaagaaaaccatgagccctaaaccacttaaatttgtggaattgtgtcaatatcaactggttctaggttgttgctt 19092116  T
Q  206 tgacatgaataaataataatgtgcttctatttcgagtctacgattgttattttcaactttctagttggaggaagagcgaaatcgatannnnnnnnnnnnn 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||                  
T  19092117 tgacatgaataaataataatgtgcttctatttcgagtctacgattgttattttcaactttctagttggaggaagagcgacatcgat--------ttattt 19092208  T
Q  306 nnnnatcaaaacgtcattgttgcataagccataataatcattatgttgtg-----------tgttctaaataaataatgttgttcttggcaaactttttt 394  Q
        ||||||||||||||||||||||||||||||||||||||||||||||           | ||  |||||||| ||||||||||||||||||||||||    
T  19092209 ttttatcaaaacgtcattgttgcataagccataataatcattatgttgtgttctatttaactttttaaaataaattatgttgttcttggcaaactttttt 19092308  T
Q  395 gacagttaaaatatgctgtata 416  Q
    |||||||||| |||| ||||||    
T  19092309 gacagttaaattatgttgtata 19092330  T

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