View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16870_high_7 (Length: 318)
Name: NF16870_high_7
Description: NF16870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16870_high_7 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 128 - 318
Target Start/End: Original strand, 6729294 - 6729484
Alignment:
| Q |
128 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgcgaaagaggtacggtaaggggggtagtgtgatgaagtgataacagt |
227 |
Q |
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| T |
6729294 |
atagatcgatgtgttaacaatcggctgagtgaaatagccataggtttgggtttgtgaaagaggtacggtaaggggggtagtgtgatgaagtgataacggt |
6729393 |
T |
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| Q |
228 |
gtagagaaaggaataaaatttgttgaggtagagaatggggttgttgcagatccagtgaaaggtgatgagtttgtgtgggttagaggtagtg |
318 |
Q |
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| T |
6729394 |
gtagagaaaagaataaaatttgttgaggtagagaatggggttgttgcagatctagtgaagggtgatgagtttgtgtgggttagaggtagtg |
6729484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 98
Target Start/End: Original strand, 6729197 - 6729282
Alignment:
| Q |
13 |
aatatggtggtgtttggtacttgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaacggcgagactgaaa |
98 |
Q |
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| T |
6729197 |
aatatggtggtgtttggtacgtgggatagggtggtgtggagtaggaaaaattgtagtgtggaggagttgaaatggcgaaactgaaa |
6729282 |
T |
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