View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16870_low_1 (Length: 381)
Name: NF16870_low_1
Description: NF16870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16870_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 328; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Original strand, 32018854 - 32019205
Alignment:
| Q |
14 |
gaagatgcaacttgttccaaagcaaatggatggacaaagtgaaaataccatgaatatcctcgggaaatcatgtcggaaaataccataaattccgattatg |
113 |
Q |
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| T |
32018854 |
gaagatgcaacttgttccaaagcaaatggatggacaaagtgaaaataccatgaatatcctcgggaaatcatgtcggaaaataccataaattccgattatg |
32018953 |
T |
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| Q |
114 |
aaagctgatattagtgtcacagtccccaaaatgatgc-tgccctcatcaaacactcaaagtaatcgatgtaaggaggcctagaacaaagcaaaatcagat |
212 |
Q |
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| T |
32018954 |
aaagctgatattagtgtcacagtccccaaaatgatgcctaccctcatcaaacactcaaagtaattgatgtaaggagccctagaacaaagcaaaatcagat |
32019053 |
T |
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| Q |
213 |
atagataatgttaatatgggaaagcaacatatgcataaagaaattaatggtgaaaaacaaacttacatatcacgggcgtcatagaccggagccgagtcta |
312 |
Q |
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| T |
32019054 |
atagataatgttaatatgggaaagcaacatatgcataaagaaattaatggtgaaaaacaaacttacatatcacgggcgtcatagaccggagccgagtcta |
32019153 |
T |
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| Q |
313 |
tagtatgcttctgttcaacttcgataaccagggcttctgtcgaaggtgcatg |
364 |
Q |
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| T |
32019154 |
tagtatgcttctgttcaacttcgataaccagggcttttgtcgaaggtgcatg |
32019205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 39823287 - 39823243
Alignment:
| Q |
234 |
aagcaacatatgcataaagaaattaatggtgaaaaacaaacttac |
278 |
Q |
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| T |
39823287 |
aagcaacatatgcagaaagaaattaaaggcgaaaaacaaacttac |
39823243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 215
Target Start/End: Complemental strand, 39823421 - 39823318
Alignment:
| Q |
113 |
gaaagctgatattagtgtcacagtccccaaaatgatg-ctgccctcatcaaacactcaaagtaatcgatgtaaggaggcctagaacaaagcaaaatcaga |
211 |
Q |
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|||||||||||| ||| |||||||||||||| |||| || | ||||||||| ||| ||| || ||||||| || ||||||| |||||||||||||| |
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| T |
39823421 |
gaaagctgatatcggtgccacagtccccaaaaggatggctatcttcatcaaactctctaagaaagagatgtaattagccctagaataaagcaaaatcaga |
39823322 |
T |
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| Q |
212 |
tata |
215 |
Q |
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|||| |
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| T |
39823321 |
tata |
39823318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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