View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16870_low_2 (Length: 367)
Name: NF16870_low_2
Description: NF16870
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16870_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 46464588 - 46464253
Alignment:
| Q |
14 |
atattaagcacaatatttatgaacacatgtttagcacagcttcaaactttcagcatacaacaaagcacaaccttggacacaaacatcttgggattcaaaa |
113 |
Q |
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| T |
46464588 |
atattaagcacaatatttatgaacacatgtttagcacagcttcaaactttcagcatacaacaaagcacaaccttggacacaaacatcttgggattcaaaa |
46464489 |
T |
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| Q |
114 |
tgccaggaccctccctcccagtaatccctctattgttcatgtttgtcctaattcctctatacgaccgagttttcgtcccgcttattcgaagaatcacagg |
213 |
Q |
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| T |
46464488 |
tgccaggaccctccctcccagtaatccctctattgttcatgtttgtcctaattcctctatacgaccgagttttcgtcccgcttattcgaagaatcacagg |
46464389 |
T |
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| Q |
214 |
aatcccaactggaatccgacaccttcaaagaattggaattggattggttctatcagctatatcaatgttagttgctggttttgtcgaaacacgtcgaaaa |
313 |
Q |
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| T |
46464388 |
aatcccaaccggaatccgacaccttcaaagaattggaattggattggttctatcagctatatcaatgttagttgctggttttgtcgaaacacgtcgaaaa |
46464289 |
T |
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| Q |
314 |
tctgtagccatagaacataatatggtagatagcacg |
349 |
Q |
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| T |
46464288 |
tctgtagccatagaacataatatggtagatagcacg |
46464253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 60
Target Start/End: Complemental strand, 37982473 - 37982445
Alignment:
| Q |
32 |
atgaacacatgtttagcacagcttcaaac |
60 |
Q |
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| T |
37982473 |
atgaacacatgtttagcacagcttcaaac |
37982445 |
T |
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