View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16871_low_1 (Length: 440)
Name: NF16871_low_1
Description: NF16871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16871_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Complemental strand, 10192850 - 10192437
Alignment:
| Q |
11 |
atcatcaccatgaaatgttttacaaacatgtgaaggtgtgaannnnnnnatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcg |
110 |
Q |
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| T |
10192850 |
atcatcaccatgaaatgttttacaaacatgtgaaggtgtgaatttttttatcacaagtgaagcagagttcctccttctgaaatagatcaaatcctcttcg |
10192751 |
T |
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| Q |
111 |
ccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcaca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10192750 |
ccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgttggtagcttggttgctaagagttccttcaca |
10192651 |
T |
|
| Q |
211 |
tgtccatgttgatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgttttacatt |
310 |
Q |
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| T |
10192650 |
tgtccatgtagatcttcctggttcttgattaatgttctaaaggatattgtggggataatgtattgttgatattgatatatgcccaaatctgttttacatt |
10192551 |
T |
|
| Q |
311 |
tctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagttggggcattttgatacatagattgttatacttatatg |
410 |
Q |
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| T |
10192550 |
tctttttctgtattttacatatctgttctctctattttagtttggtatagctgtggggtaagttggggcattttgatacttggattgttatacttatatg |
10192451 |
T |
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| Q |
411 |
cagaatctgtgtta |
424 |
Q |
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| T |
10192450 |
cagaatctgtgtta |
10192437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 9e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 81 - 237
Target Start/End: Original strand, 19460816 - 19460969
Alignment:
| Q |
81 |
ctccttctgaaatagatcaaatcctcttcgccttgttcttattagccacttctcctttagtactgattctgctgacataatttgttaccctactaatgtt |
180 |
Q |
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||||||||||||||||||||||||||||| |||||||||||| || ||||| | ||| |||||||||| ||||| ||||||||||||| | |||||| |
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| T |
19460816 |
ctccttctgaaatagatcaaatcctcttccccttgttcttatcagtcacttat---ttattactgattctattgacagaatttgttaccctgccaatgtt |
19460912 |
T |
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| Q |
181 |
ggtagcttggttgctaagagttccttcacatgtccatgttgatcttcctggttcttg |
237 |
Q |
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| T |
19460913 |
ggtagcttggttgcggagagttccttcacatctctgtgtagatcttcctggttcttg |
19460969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 274 - 402
Target Start/End: Original strand, 19461064 - 19461192
Alignment:
| Q |
274 |
tgttgatattgatatatgcccaaatctgttttacatttctttttctgtattttacatatctgttctcactattttagtttggaatagccgtggggtaagt |
373 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||| | | ||||| |||||||||||| | ||||| ||||||||| | |
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| T |
19461064 |
tgttgatattgatgtatgaacaaatctgttttacatttcttttcctgtattttacatttattttctctctattttagtttaggatagctgtggggtaaat |
19461163 |
T |
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| Q |
374 |
tggggcattttgatacatagattgttata |
402 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
19461164 |
tggggcattttgatactcggattgttata |
19461192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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