View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16871_low_3 (Length: 309)
Name: NF16871_low_3
Description: NF16871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16871_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 28091827 - 28092111
Alignment:
| Q |
9 |
ataatactatttcaatctaatannnnnnncttcaggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatg |
108 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28091827 |
ataatactatttcaatctaatatttttttcttcaggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatg |
28091926 |
T |
|
| Q |
109 |
attggcctatttgtctagctgtcctcattttttacggtatagttgctcgtattgtggccttcatctgtctcatgatcacccaaaagaagtgatttaggta |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28091927 |
attggcctatttgtctagctgtcctcattttttacggtatagttgctcgtattgtggccttcatctgtctcatgatcacccaaaagaagtgatttaggta |
28092026 |
T |
|
| Q |
209 |
ggatatgaatgttggagatttcattcacatgtgtcttatcagctagggatagtttccaattttccaccagaatacatgatgctag |
293 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28092027 |
ggatatgaatgttgaagatgtcattcacatgtgtgttatcagctagggatagtttccaattttccaccagaatacatgatgctag |
28092111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 42 - 172
Target Start/End: Complemental strand, 41040022 - 41039892
Alignment:
| Q |
42 |
aggtacaccggcgtatggctgataactcgttgtagttcactgatgaatagcggttataatgtcaatgattggcctatttgtctagctgtcctcatttttt |
141 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||||||||||||||| || |||||| || ||||||| |||| ||||||||| ||| |||||||| |
|
|
| T |
41040022 |
aggtacactggagtatggttgataactcgttgtagttcactgatgaacagtggttatgatctcaatgaatggctcatttgtctacttgtactcattttga |
41039923 |
T |
|
| Q |
142 |
acggtatagttgctcgtattgtggccttcat |
172 |
Q |
| |
|
| || ||| |||| || ||||| |||||||| |
|
|
| T |
41039922 |
atggaataattgcccgaattgtagccttcat |
41039892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University