View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16871_low_4 (Length: 301)
Name: NF16871_low_4
Description: NF16871
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16871_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 43741702 - 43741973
Alignment:
| Q |
13 |
gaatgccgtccaaagtcacacactcatatggaaatatcaattggactttcaaagcattaacgaaaacgtgctctttcgtgctgacaacttcgcttttgag |
112 |
Q |
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| T |
43741702 |
gaatgccgtccaaagtcacacattcatatggaaatatcaattggactttcaaagcattaacgacaacgtgctctttcgtgctgacaacttcgcttttgag |
43741801 |
T |
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| Q |
113 |
ttcaacaaatacaattatcgctcaaagtttaaaccaactgatatggtgaaagagtgtgggatatgtcctctttataccaaagaaaaggatcataatggtg |
212 |
Q |
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| T |
43741802 |
ttcaacaaatacaattatcgctcaaagtttaaaccaactgatatggtgaaagagtgcgggatatgtcctctttataccaaagaaaaggatcataatggtg |
43741901 |
T |
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| Q |
213 |
tgaaatatttaaatgacattgaagaacccagtaggagcaatgcttcatagtgtgtttgtatggggggaaaaa |
284 |
Q |
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| T |
43741902 |
tgaaatatttaaatgacattgaagaacccagtaggagcaatgcttcatagtgtgtttgtatggggggaaaaa |
43741973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 211
Target Start/End: Original strand, 37933161 - 37933215
Alignment:
| Q |
157 |
ggtgaaagagtgtgggatatgtcctctttataccaaagaaaaggatcataatggt |
211 |
Q |
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| T |
37933161 |
ggtgaaagagtgtggaatatgtcctctgtataccaaataaaatgatgataatggt |
37933215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 197
Target Start/End: Complemental strand, 19874094 - 19874052
Alignment:
| Q |
155 |
atggtgaaagagtgtgggatatgtcctctttataccaaagaaa |
197 |
Q |
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| T |
19874094 |
atggtgaaagagtgtggaatatgtcctctttatactaaagaaa |
19874052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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