View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16872_high_1 (Length: 313)

Name: NF16872_high_1
Description: NF16872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16872_high_1
NF16872_high_1
[»] chr4 (17 HSPs)
chr4 (1-293)||(19727493-19727783)
chr4 (50-294)||(17419339-17419585)
chr4 (42-239)||(13267937-13268131)
chr4 (42-167)||(12230795-12230920)
chr4 (42-208)||(15870948-15871113)
chr4 (49-148)||(13559374-13559473)
chr4 (49-208)||(15888530-15888688)
chr4 (42-167)||(18554722-18554842)
chr4 (176-286)||(18554837-18554948)
chr4 (51-167)||(13235220-13235326)
chr4 (120-207)||(9886878-9886965)
chr4 (165-209)||(20872335-20872379)
chr4 (49-84)||(9886991-9887026)
chr4 (168-242)||(10057547-10057619)
chr4 (177-293)||(13559488-13559604)
chr4 (176-242)||(13235161-13235225)
chr4 (44-84)||(20872219-20872259)
[»] chr7 (8 HSPs)
chr7 (42-293)||(16068059-16068310)
chr7 (49-148)||(9692997-9693096)
chr7 (176-293)||(11800097-11800214)
chr7 (176-242)||(16379147-16379212)
chr7 (1-46)||(16067979-16068024)
chr7 (165-242)||(11091519-11091593)
chr7 (177-293)||(9693111-9693227)
chr7 (165-208)||(46579864-46579907)
[»] scaffold0010 (2 HSPs)
scaffold0010 (42-298)||(142959-143215)
scaffold0010 (1-46)||(143250-143295)
[»] chr5 (9 HSPs)
chr5 (49-298)||(25791682-25791933)
chr5 (61-242)||(14137865-14138043)
chr5 (42-228)||(32948741-32948923)
chr5 (50-208)||(13938909-13939064)
chr5 (42-207)||(25581332-25581495)
chr5 (84-167)||(23909154-23909237)
chr5 (135-207)||(24564858-24564929)
chr5 (135-207)||(24605895-24605966)
chr5 (49-93)||(25756311-25756355)
[»] chr8 (6 HSPs)
chr8 (95-294)||(17861384-17861582)
chr8 (50-190)||(10454081-10454220)
chr8 (42-242)||(15727669-15727869)
chr8 (103-198)||(1683187-1683281)
chr8 (110-198)||(1681149-1681236)
chr8 (165-242)||(22237155-22237230)
[»] scaffold1043 (2 HSPs)
scaffold1043 (42-293)||(517-764)
scaffold1043 (14-46)||(450-482)
[»] chr6 (9 HSPs)
chr6 (42-292)||(14746418-14746662)
chr6 (119-294)||(22395515-22395692)
chr6 (42-167)||(19545146-19545266)
chr6 (42-98)||(22395460-22395516)
chr6 (49-88)||(26587843-26587882)
chr6 (176-286)||(19545261-19545372)
chr6 (165-242)||(20733349-20733424)
chr6 (1-46)||(14746697-14746742)
chr6 (60-88)||(26588160-26588188)
[»] scaffold0408 (2 HSPs)
scaffold0408 (42-292)||(14854-15097)
scaffold0408 (1-46)||(15132-15177)
[»] chr2 (7 HSPs)
chr2 (42-240)||(29718098-29718294)
chr2 (42-117)||(18985275-18985350)
chr2 (42-126)||(26861213-26861297)
chr2 (165-242)||(34858297-34858372)
chr2 (165-242)||(34873359-34873434)
chr2 (165-208)||(20916211-20916254)
chr2 (179-260)||(26861336-26861418)
[»] chr1 (4 HSPs)
chr1 (42-242)||(21496470-21496674)
chr1 (43-293)||(17451266-17451516)
chr1 (165-242)||(21995769-21995844)
chr1 (165-293)||(15544157-15544287)
[»] scaffold0385 (1 HSPs)
scaffold0385 (42-242)||(16060-16257)
[»] scaffold0290 (1 HSPs)
scaffold0290 (44-260)||(11838-12053)
[»] chr3 (13 HSPs)
chr3 (50-167)||(21977092-21977209)
chr3 (50-167)||(21999523-21999640)
chr3 (50-167)||(22161718-22161835)
chr3 (49-165)||(19186771-19186887)
chr3 (49-208)||(16357828-16357985)
chr3 (42-148)||(10341062-10341168)
chr3 (49-129)||(10302744-10302824)
chr3 (42-117)||(16928586-16928662)
chr3 (146-200)||(27868366-27868419)
chr3 (176-291)||(10340933-10341048)
chr3 (165-242)||(52988963-52989038)
chr3 (176-293)||(10302605-10302723)
chr3 (165-208)||(14967088-14967131)
[»] scaffold0118 (2 HSPs)
scaffold0118 (50-167)||(11943-12060)
scaffold0118 (178-242)||(11883-11946)
[»] scaffold0207 (1 HSPs)
scaffold0207 (42-201)||(740-897)
[»] scaffold0364 (2 HSPs)
scaffold0364 (42-129)||(14588-14675)
scaffold0364 (165-199)||(14532-14566)
[»] scaffold0170 (1 HSPs)
scaffold0170 (147-298)||(17999-18159)
[»] scaffold0094 (1 HSPs)
scaffold0094 (42-167)||(2502-2621)
[»] scaffold0686 (1 HSPs)
scaffold0686 (165-242)||(1311-1386)
[»] scaffold0395 (1 HSPs)
scaffold0395 (165-242)||(11761-11836)
[»] scaffold0381 (2 HSPs)
scaffold0381 (120-207)||(11579-11666)
scaffold0381 (49-84)||(11518-11553)
[»] scaffold0061 (2 HSPs)
scaffold0061 (1-46)||(16586-16631)
scaffold0061 (1-46)||(25644-25689)


Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 293
Target Start/End: Original strand, 19727493 - 19727783
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtctta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  19727493 caagtagtgactgttccaacttatgttgtagatgacactcttaaggcggagaatctttgcactttagggtatcttaatctatgacgggagggttgtctta 19727592  T
Q  101 aattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaac 200  Q
    ||||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19727593 aattttaaaatgttgttactgttatgatgtgaattttgacgagagaatgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaac 19727692  T
Q  201 tagtttagtttgttttatttgagtttttagtcttaaaaagagaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatca 293  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  19727693 tagtttagtttgttttatttgagtttttagtcttaaaa--agaataatccggtaggttaaaaattggttagtgtttgaatgataggttaatca 19727783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 50 - 294
Target Start/End: Complemental strand, 17419585 - 17419339
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatg 149  Q
    ||||||||||||||||||||||||||||||||||| || ||  |||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  17419585 agaatctttgcactttagggtatcttaatctatgaaggaagatttgttttaaattttaaaatgttgttactattatgatgtgaattttgatgagagaatg 17419486  T
Q  150 atggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataa 247  Q
    ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||  ||||||    
T  17419485 atgatgaacgaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagttttttttaattaagtttttagtcttataaagagtgaataa 17419386  T
Q  248 tctagtaggttaaaaattggttagtgtttgaatgataggttaatcac 294  Q
       |||||||||| || || |||||||||||||||||||||||||||    
T  17419385 atcagtaggttaacaaatgattagtgtttgaatgataggttaatcac 17419339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 42 - 239
Target Start/End: Complemental strand, 13268131 - 13267937
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |  |||||  |||||||||||||| ||||| |    
T  13268131 taagggggagaatctttgcactttagggtatcttaatttatgatgggagggttttcttaaattttaatacattgttgttgttatgatgtgaattttgacg 13268032  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaa 239  Q
    ||||||||||| ||||| ||||| ||||||||||||||||||||| ||||||| ||||||||||||| || ||| | ||||| |||||||||||||||    
T  13268031 agagaatgatgatgaacgaattg-aaagatgaagttgaaagatgacaattgagtaaaactagtttagatt-tttgaattgag-ttttagtcttaaaaa 13267937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 42 - 167
Target Start/End: Complemental strand, 12230920 - 12230795
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| || |||||||||||| |||||||    
T  12230920 taagggggataatctttgcactttagggtatcttaatctattatgggagggttgtcttaaattttaatatgttgttgctattatgatgtgaattttgatg 12230821  T
Q  142 agagaatgatggtgaacaaattgaaa 167  Q
    ||||||||||| ||||||||||||||    
T  12230820 agagaatgatgatgaacaaattgaaa 12230795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 208
Target Start/End: Original strand, 15870948 - 15871113
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||     | || |||||||||||| || |||||||    
T  15870948 taagggggagaatctttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaatgcactttttctgttatgatgtaaattttgatg 15871047  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
    || |||||||| || || ||||| ||||||||| || |||||||| |||||||| ||||||||||||    
T  15871048 agtgaatgatgatggacgaattg-aaagatgaaattaaaagatgacaattgagggaaactagtttag 15871113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 13559374 - 13559473
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 148  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||| ||| ||||||||||||||    
T  13559374 gagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgatgagagaat 13559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 15888530 - 15888688
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 148  Q
    |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||     | || |||||||||||| ||  |||||||| ||||    
T  15888530 gagaatctttgcactttaggatatctaaatttatgatgggagggttgtcttaaattttaatgcacttttgctgttatgatgtaaatattgatgagtgaat 15888629  T
Q  149 gatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
    |||| || || ||||| ||||||||| || |||||||| |||||||| ||||||||||||    
T  15888630 gatgatggacgaattg-aaagatgaaattaaaagatgacaattgagggaaactagtttag 15888688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 18554722 - 18554842
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||     |||||| |||||||| ||||||||||||||| |||||||    
T  18554722 taagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttatgatgtgaattttgatg 18554816  T
Q  142 agagaatgatggtgaacaaattgaaa 167  Q
    ||| ||||||| ||||  ||||||||    
T  18554817 agaaaatgatgatgaaagaattgaaa 18554842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 18554837 - 18554948
Alignment:
Q  176 ttgaaagatgagaattgagg-aaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagt 272  Q
    |||||||||||||||||||| ||||||||||||| || ||| | ||||| |||||||||||||||||  | ||||||| |||||||||  |    |||||    
T  18554837 ttgaaagatgagaattgaggaaaaactagtttaggtt-tttgaattgag-ttttagtcttaaaaagagtggataatctggtaggttaacgaagaattagt 18554934  T
Q  273 gtttgaatgatagg 286  Q
    ||||||||||||||    
T  18554935 gtttgaatgatagg 18554948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 167
Target Start/End: Complemental strand, 13235326 - 13235220
Alignment:
Q  51 gaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatga 150  Q
    |||||||||||||||||||||| ||||| ||||| || ||||||          |||| ||||||||| |||||||||||||| ||||| ||||||||||    
T  13235326 gaatctttgcactttagggtatattaatttatgacggaagggtt----------ttaatatgttgttagtgttatgatgtgaattttgacgagagaatga 13235237  T
Q  151 tggtgaacaaattgaaa 167  Q
     | | ||| ||||||||    
T  13235236 cgattaacgaattgaaa 13235220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Complemental strand, 9886965 - 9886878
Alignment:
Q  120 tgttatgatgtgaactt-tgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 207  Q
    |||||||||||||  || |||||||||| | ||| | ||| |||| |||||||| || ||||||||||||||||| |||||||||||||    
T  9886965 tgttatgatgtgagattgtgatgagagatttatgataaacgaatt-aaaagatgcagatgaaagatgagaattgaagaaaactagttta 9886878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 209
Target Start/End: Original strand, 20872335 - 20872379
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagt 209  Q
    ||||||||||||||||| || | ||||||||||||||||||||||    
T  20872335 aaaagatgaagttgaaatatcataattgaggaaaactagtttagt 20872379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 84
Target Start/End: Complemental strand, 9887026 - 9886991
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatga 84  Q
    |||||||||||||||||||||||||||||| |||||    
T  9887026 gagaatctttgcactttagggtatcttaatatatga 9886991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 242
Target Start/End: Complemental strand, 10057619 - 10057547
Alignment:
Q  168 agatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    ||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  10057619 agatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 10057547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 13559488 - 13559604
Alignment:
Q  177 tgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagtgt 274  Q
    |||||||||||||||||||||||||||||||  || ||||| ||||| |||||| ||| ||||||  | ||||||| |||||||||  | |  || || |    
T  13559488 tgaaagatgagaattgaggaaaactagtttaagtt-ttttaattgag-ttttagcctttaaaagagtggataatctggtaggttaatgaataattggtat 13559585  T
Q  275 ttgaatgataggttaatca 293  Q
    |||||||||||| ||||||    
T  13559586 ttgaatgatagggtaatca 13559604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 242
Target Start/End: Complemental strand, 13235225 - 13235161
Alignment:
Q  176 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||| |||||||||||||||||| ||||||| || ||| | ||||| ||||||||||||||||||    
T  13235225 ttgaaatatgagaattgaggaaaaccagtttaggtt-tttgaattgag-ttttagtcttaaaaagag 13235161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 20872219 - 20872259
Alignment:
Q  44 agggagagaatctttgcactttagggtatcttaatctatga 84  Q
    |||| ||||||||||||||||| |||||||||||| |||||    
T  20872219 agggggagaatctttgcacttttgggtatcttaatatatga 20872259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 42 - 293
Target Start/End: Original strand, 16068059 - 16068310
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  16068059 taagggggagaatctttgcaatttagggtatcttaatctatgacgggagggttgtcttaaattttaatatgttgttactgttatgatgtgaattttgatg 16068158  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 241  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16068159 agaaaatgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 16068258  T
Q  242 gaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatca 293  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||    
T  16068259 gaataatctggtaggttaaaaattggttagtgtttgaatgttaggttaatca 16068310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 49 - 148
Target Start/End: Original strand, 9692997 - 9693096
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 148  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | ||||||  |||||||||| ||| ||||||||||||||    
T  9692997 gagaatctttgcactttagagtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatgagaagtttgatgagagaat 9693096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 293
Target Start/End: Original strand, 11800097 - 11800214
Alignment:
Q  176 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagtg 273  Q
    |||||||||||||||||||||||||||||| || || ||||| | ||| |||||||||||||||||  | ||||||| |||||||||| |    ||||||    
T  11800097 ttgaaagatgagaattgaggaaaactagttaagctt-ttttaatagag-ttttagtcttaaaaagaatggataatctggtaggttaaagaagaattagtg 11800194  T
Q  274 tttgaatgataggttaatca 293  Q
    ||| ||||||||| ||||||    
T  11800195 tttcaatgatagggtaatca 11800214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 16379147 - 16379212
Alignment:
Q  176 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    ||||||| ||||||||||||||||||||||||| || ||| | ||||||||||||| ||||||||||    
T  16379147 ttgaaagttgagaattgaggaaaactagtttaggtt-tttgaattgagtttttagttttaaaaagag 16379212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16067979 - 16068024
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagg 46  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||    
T  16067979 caagtagtgactgttccaacttattatgtagatgacactcttaagg 16068024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 11091593 - 11091519
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||   |||  | |||||||| |||||||||||||||    
T  11091593 aaaagatgaaattgaaagctgagaattaaggaaaactagtttag---gttcgaattgagtttctagtcttaaaaagag 11091519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 177 - 293
Target Start/End: Original strand, 9693111 - 9693227
Alignment:
Q  177 tgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagtgt 274  Q
    |||||||||||||||||||||||||||||||  || ||||| ||||| |||||| ||| ||||||  | ||||||| |||||||||  | |  || || |    
T  9693111 tgaaagatgagaattgaggaaaactagtttaagtt-ttttaattgag-ttttagcctttaaaagagtggataatctggtaggttaatgaataattggtat 9693208  T
Q  275 ttgaatgataggttaatca 293  Q
    |||||||||||| ||||||    
T  9693209 ttgaatgatagggtaatca 9693227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Original strand, 46579864 - 46579907
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  46579864 aaaagatgaaattgaaagttgagaattaaggaaaactagtttag 46579907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 42 - 298
Target Start/End: Complemental strand, 143215 - 142959
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| | |||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  143215 taagggggtgaatcttttcactttatggtatcttaatctatgatgggaaggttgtcttaaattttaaaatgttgttactgttatgatgtgaattttgatg 143116  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 241  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  143115 agagattgatgatgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttgtttgagtttttagtcttaaaaaga 143016  T
Q  242 gaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatcacagag 298  Q
    ||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||    
T  143015 gaataatccggtaggttaaaaattggttggtgtttgaatgataggttaatcacagag 142959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 143295 - 143250
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagg 46  Q
    |||||||||| ||||||| |||| |||||||||||| |||||||||    
T  143295 caagtagtgattgttccagcttacgttgtagatgacgctcttaagg 143250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 169; Significance: 1e-90; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 49 - 298
Target Start/End: Complemental strand, 25791933 - 25791682
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 148  Q
    ||||||||||| ||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25791933 gagaatctttgaactttagggtatcttaatctatgacaggagggttttcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 25791834  T
Q  149 gatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaata 246  Q
    |||| ||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||| || || |||||||||||||||||||||||  |||||    
T  25791833 gatgatgaacgaattgaaaatgtgaagttgaaagatgagaattgagaaaaactagtttagttttttctaattgagtttttagtcttaaaaagagtgaata 25791734  T
Q  247 atctagtaggttaaaaattggttagtgtttgaatgataggttaatcacagag 298  Q
    ||| ||||||||||    || |||||||||||||||||||||||||||||||    
T  25791733 atccagtaggttaacctatgattagtgtttgaatgataggttaatcacagag 25791682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 242
Target Start/End: Complemental strand, 14138043 - 14137865
Alignment:
Q  61 actttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaa 160  Q
    |||||||||||||||| | | |||||||||||||||||||||| |||| ||||||||  ||||||| |||||| ||||||||  |||| ||| |||||||    
T  14138043 actttagggtatcttattatttgatgggagggttgtcttaaatcttaatatgttgttgttgttatgctgtgaattttgatgaaggaataatgatgaacaa 14137944  T
Q  161 attgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    ||| ||||||| ||||||||||||||||||||||| |||||||||||| || ||| |  ||||||||||| | |||||||||    
T  14137943 att-aaaagataaagttgaaagatgagaattgagg-aaactagtttaggtt-tttaaaatgagtttttagccgtaaaaagag 14137865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 228
Target Start/End: Complemental strand, 32948923 - 32948741
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||||||||||| |||||| ||||| |||||||||||||||||| |||||||| |||||||| ||||||||||| | | | |||||    
T  32948923 taagggggagaatctttgcactttagagtatctaaatct-tgatgggagggttgtctttaattttaatatgttgttgctgttatgatgag-attgtgatg 32948826  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagttttt 228  Q
     |||| | ||| |||||  ||| |||||||||||||||||||| ||||| |||||||||| |||||| || ||||| ||||||||||    
T  32948825 tgagatttatgatgaacggatt-aaaagatgaagttgaaagataagaatcgaggaaaacttgtttaggtt-ttttaattgagttttt 32948741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 208
Target Start/End: Complemental strand, 13939064 - 13938909
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtga-actttgatgagagaat 148  Q
    |||||||||||||||||| |||||||||| ||||||||  ||  ||| |||| | |||| ||||||||  ||||||||||||| | |||||||||||| |    
T  13939064 agaatctttgcactttagtgtatcttaatatatgatggacgg--tgt-ttaattcttaagatgttgttgttgttatgatgtgagattttgatgagagatt 13938968  T
Q  149 gatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
     ||| ||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  13938967 tatgatgaacgaattgaaa-gataaagttgaaagatgagaattgaggaaaactagtttag 13938909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 25581332 - 25581495
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaa-atgttgttactgttatgatgtgaactttgat 140  Q
    |||||| |||||||||| ||||||||||||||||| |||||||| |||||   ||||| ||||||||  ||||||||  |||||||||| || || ||||    
T  25581332 taagggggagaatctttccactttagggtatctta-tctatgattggaggaacgtctttaattttaattatgttgttgttgttatgatgaga-ctgtgat 25581429  T
Q  141 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 207  Q
    |||||| | ||| ||||| |||| |||||||||||||||||||||||||||||| |||||| |||||    
T  25581430 gagagatttatgatgaacgaatt-aaaagatgaagttgaaagatgagaattgagtaaaacttgttta 25581495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 84 - 167
Target Start/End: Complemental strand, 23909237 - 23909154
Alignment:
Q  84 atgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaa 167  Q
    ||||||||||||||||||||||||| | ||||||  |||||||||| ||| |||||||||||||| | | ||||| ||||||||    
T  23909237 atgggagggttgtcttaaattttaataagttgttgttgttatgatgagaattttgatgagagaataacgatgaacgaattgaaa 23909154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 24564929 - 24564858
Alignment:
Q  135 tttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 207  Q
    |||||||||||| | ||| ||||| || | ||||||||||||||||| |||||||||||||||||||| ||||    
T  24564929 tttgatgagagatttatgatgaacgaaat-aaaagatgaagttgaaaaatgagaattgaggaaaactaattta 24564858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 24605966 - 24605895
Alignment:
Q  135 tttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 207  Q
    |||||||||||| | ||| ||||| || | ||||||||||||||||| |||||||||||||||||||| ||||    
T  24605966 tttgatgagagatttatgatgaacgaaat-aaaagatgaagttgaaaaatgagaattgaggaaaactaattta 24605895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 93
Target Start/End: Original strand, 25756311 - 25756355
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggt 93  Q
    ||||||||||||||||||||||||||||||||||||  |||||||    
T  25756311 gagaatctttgcactttagggtatcttaatctatgacaggagggt 25756355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 164; Significance: 1e-87; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 95 - 294
Target Start/End: Original strand, 17861384 - 17861582
Alignment:
Q  95 gtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgag 194  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  17861384 gtcttaaattttaaaatgttgttactgttatgacgtgaattttgatgagagaatgatggtgaataaattgaaaagatgaagtggaaagatgagaattgag 17861483  T
Q  195 gaaaactagtttagtttgttttatttgagtttttagtcttaaaaagagaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatcac 294  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  17861484 gaaaactag-ttagtttgttttatttgagtttttagtcttaaaaagagaataatccggtaggttaaaaattggttagtggttgaatgataggttaatcac 17861582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 50 - 190
Target Start/End: Original strand, 10454081 - 10454220
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatg 149  Q
    |||||||||| |||||||||||||||||||||||||||| |||||||| || ||||||| ||||| || |||||||| |||||| |||||||||||||||    
T  10454081 agaatctttgaactttagggtatcttaatctatgatgggtgggttgtcctatattttaatatgtttttgctgttatggtgtgaattttgatgagagaatg 10454180  T
Q  150 atggtgaacaaattgaaaagatgaagttgaaagatgagaat 190  Q
    ||| ||||| |||| |||| |||| ||||||||||||||||    
T  10454181 atgatgaacgaatt-aaaatatgatgttgaaagatgagaat 10454220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 15727869 - 15727669
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatggga------gggttgtcttaaattttaaaatgttgttactgttatgatgtgaact 135  Q
    |||||| ||||||| || ||||||||||||||||||||||||||||||      ||||||| ||| ||||||| ||||||||   ||||||||||||| |    
T  15727869 taagggggagaatccttacactttagggtatcttaatctatgatgggattgagagggttgtattagattttaatatgttgtt---gttatgatgtgaatt 15727773  T
Q  136 ttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtctta 235  Q
    || ||||||| |||| | ||||  |||| |||||||||||||||||||| ||||||||||||||||||||| | |  ||| | ||||||||||| |||||    
T  15727772 tttatgagaggatgaagatgaatgaatt-aaaagatgaagttgaaagataagaattgaggaaaactagttttgat--tttgaattgagtttttattctta 15727676  T
Q  236 aaaagag 242  Q
    |||||||    
T  15727675 aaaagag 15727669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 1683281 - 1683187
Alignment:
Q  103 ttttaaaatgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaa 198  Q
    |||||| |||||||| | ||||||||||||| |||||||||||| ||||| ||||| |||| ||||||||||||||| | ||||||||| ||||||    
T  1683281 ttttaatatgttgttgcggttatgatgtgaattttgatgagagactgatgatgaacgaatt-aaaagatgaagttgacatatgagaattaaggaaa 1683187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 198
Target Start/End: Complemental strand, 1681236 - 1681149
Alignment:
Q  110 atgttgttactgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaa 198  Q
    |||||||| | ||||||||||||| |||||||||||| ||||| | ||| |||| |||||||||| |||| ||||||||||| ||||||    
T  1681236 atgttgttgcggttatgatgtgaattttgatgagagactgatgataaacgaatt-aaaagatgaaattgacagatgagaattaaggaaa 1681149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 22237155 - 22237230
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  22237155 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 22237230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: scaffold1043
Description:

Target: scaffold1043; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 42 - 293
Target Start/End: Original strand, 517 - 764
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaatttt-aaaatgttgttactgttatgatgtgaactttgat 140  Q
    |||||| ||||||||||||| | ||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||| ||| ||    
T  517 taagggggagaatctttgcaatgtagagtatcttaatctatgatgagagggttgtcttaaatttttaaaatgttgttactgttatgatatgaatttttat 616  T
Q  141 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtctt--aaaa 238  Q
    |||||||||||| ||||| |||||||||||||       ||||||||||||||||||||||||||||| || ||||| |||| |||||||||||  ||||    
T  617 gagagaatgatgatgaacgaattgaaaagatg-------aagatgagaattgaggaaaactagtttaggtttttttaattgaatttttagtcttgaaaaa 709  T
Q  239 agagaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatca 293  Q
    || ||| ||||  ||||||||| || || ||| ||||| ||||||| ||||||||    
T  710 agtgaaaaatcccgtaggttaacaaatgattaatgttttaatgataagttaatca 764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1043; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 450 - 482
Alignment:
Q  14 ttccaacttatgttgtagatgacactcttaagg 46  Q
    ||||| |||||||||||||||||||||||||||    
T  450 ttccagcttatgttgtagatgacactcttaagg 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 112; Significance: 1e-56; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 42 - 292
Target Start/End: Complemental strand, 14746662 - 14746418
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||||||| |||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||| ||| |||    
T  14746662 taagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttatg 14746563  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 241  Q
    ||||||||||| ||||| |||||||||||||       ||||||||||||| ||||||||||||| |||| ||||| ||||  |||||||||| ||||||    
T  14746562 agagaatgatgatgaacgaattgaaaagatg-------aagatgagaattgcggaaaactagttttgttttttttaattga-attttagtcttgaaaaga 14746471  T
Q  242 --gaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatc 292  Q
      ||| |||   ||||||||| || || ||||||||| |||||||||||||||    
T  14746470 gtgaacaattcggtaggttaacaaatgattagtgttttaatgataggttaatc 14746418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 294
Target Start/End: Original strand, 22395515 - 22395692
Alignment:
Q  119 ctgttatgatgtgaactttgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttat 218  Q
    ||||||||||||||| ||||||||||||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||||| ||  |||| || |||||     
T  22395515 ctgttatgatgtgaattttgatgagagaaagatgatgaacgaattgaaaggatgaagttgaaagatgagaattaaggaaaagtatattaggttcttttaa 22395614  T
Q  219 ttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatcac 294  Q
    |||| ||||||||||||||||||  ||||||||  ||||||||| || || |||||||||||||||||||||||||||    
T  22395615 ttgaatttttagtcttaaaaagagtgaataatccggtaggttaacaaatgattagtgtttgaatgataggttaatcac 22395692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 19545146 - 19545266
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||     |||||| |||||||| ||||||| ||||||| |||||||    
T  19545146 taagggggagaatctttgcactttagggtatcttaatctatgatatgagggttgtc-----ttttaatatgttgttgctgttataatgtgaattttgatg 19545240  T
Q  142 agagaatgatggtgaacaaattgaaa 167  Q
    ||| ||||||| ||||  ||||||||    
T  19545241 agaaaatgatgatgaaagaattgaaa 19545266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 22395460 - 22395516
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtct 98  Q
    |||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||    
T  22395460 taagggggagagtctttgcactttagggtatcttaatatatgatgggagggttgtct 22395516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 88
Target Start/End: Complemental strand, 26587882 - 26587843
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatggg 88  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  26587882 gagaatcttttcactttagggtatcttaatctatgatggg 26587843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 286
Target Start/End: Original strand, 19545261 - 19545372
Alignment:
Q  176 ttgaaagatgagaattgagg-aaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagt 272  Q
    |||||||||||||||||||| ||||||||||||| || ||| | ||||| |||||||||||||||||  | ||||||| |||||||||  |    |||||    
T  19545261 ttgaaagatgagaattgaggaaaaactagtttaggtt-tttgaattgag-ttttagtcttaaaaagagtggataatctggtaggttaacgaagaattagt 19545358  T
Q  273 gtttgaatgatagg 286  Q
    ||||||||||||||    
T  19545359 gtttgaatgatagg 19545372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 20733349 - 20733424
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  20733349 aaaagatgaaattgaaagctgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 20733424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 14746742 - 14746697
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagg 46  Q
    ||||||||||  |||||| ||||||||| |||||||||||||||||    
T  14746742 caagtagtgatggttccagcttatgttgaagatgacactcttaagg 14746697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 88
Target Start/End: Complemental strand, 26588188 - 26588160
Alignment:
Q  60 cactttagggtatcttaatctatgatggg 88  Q
    |||||||||||||||||||||||||||||    
T  26588188 cactttagggtatcttaatctatgatggg 26588160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 42 - 292
Target Start/End: Complemental strand, 15097 - 14854
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||||||| |||||||||||||||||||| | || ||||| ||||||||||||||||||||||||||||||||||||| ||| |||    
T  15097 taagggggagaatctttgcactatagggtatcttaatctatgaggagaaggttgacttaaattttaaaatgttgttactgttatgatgtgaatttttatg 14998  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 241  Q
    ||||||||||| ||||| |||||||||||||       ||||||||||||| ||||||||||||| |||| ||||| ||||  |||||||||| ||||||    
T  14997 agagaatgatgatgaacgaattgaaaagatg-------aagatgagaattgcggaaaactagttttgttt-ttttaattga-attttagtcttgaaaaga 14907  T
Q  242 --gaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatc 292  Q
      ||| |||   ||||||||| || || ||||||||| |||||||||||||||    
T  14906 gtgaacaattcggtaggttaacaaatgattagtgttttaatgataggttaatc 14854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 15177 - 15132
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagg 46  Q
    ||||||||||  |||||| ||||||||| |||||||||||||||||    
T  15177 caagtagtgatggttccagcttatgttgaagatgacactcttaagg 15132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 240
Target Start/End: Original strand, 29718098 - 29718294
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| |||||| |||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||  |||||||||||||| |||||||    
T  29718098 taagggggagaatatttgcactttagagtatcttaatctatgatggaagggttgtcttaaattttaatatgttgttgttgttatgatgtgaattttgatg 29718197  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaag 240  Q
    ||||||||||| ||||  |||| ||||||||||||||||||||||||||| ||| |||||||||||| || ||  | |||||||||||  |||||||||    
T  29718198 agagaatgatgatgaatgaatt-aaaagatgaagttgaaagatgagaattaagg-aaactagtttaggtttttcgaattgagtttttaaccttaaaaag 29718294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 42 - 117
Target Start/End: Original strand, 18985275 - 18985350
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgtt 117  Q
    |||||| |||||||||||||| |||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||    
T  18985275 taagggggagaatctttgcacattagggtatcgtaatctatgataggagggttgtattaaattttaatatgttgtt 18985350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 26861213 - 26861297
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatg 126  Q
    |||||| |||| |||||||||||||||||||||||||| ||||||| |||||||| ||||||||||| || || || ||||||||    
T  26861213 taagggggagattctttgcactttagggtatcttaatccatgatggaagggttgtattaaattttaatatattattgctgttatg 26861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 34858297 - 34858372
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  34858297 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 34858372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 34873359 - 34873434
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  34873359 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 34873434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 20916254 - 20916211
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  20916254 aaaagatgaaattgaaagctgagaattaaggaaaactagtttag 20916211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 26861336 - 26861418
Alignment:
Q  179 aaagatgagaattgaggaa-aactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaa 260  Q
    ||||||||||||||||| | ||||||||||| ||  || | |||||||||||||||||||||||  | ||||||| |||||||||    
T  26861336 aaagatgagaattgagggagaactagtttaggtt--ttgaattgagtttttagtcttaaaaagagtggataatctggtaggttaa 26861418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 7e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 21496674 - 21496470
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||| ||  |||||| ||||  || |||    
T  21496674 taagggggagaatctttgcactttagggtatcttaatctatg-tgggagggttatcttaaatttaaatatgttgtttctaatatgatatgaatatttatg 21496576  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttattt------gagtttttagtctta 235  Q
    ||||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||||||||||| |||| |||      |||||||||||||||    
T  21496575 agagaatgatgatgaacaaattgaaa-gatgaagttgaatgatgagaattgacgaaaactagtttagttttttttttttttaatagagtttttagtctta 21496477  T
Q  236 aaaagag 242  Q
    |||||||    
T  21496476 aaaagag 21496470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 43 - 293
Target Start/End: Complemental strand, 17451516 - 17451266
Alignment:
Q  43 aagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactt-tgatg 141  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| |||||  |  ||| | |||| ||| |||| || |||||||||||  || |||||    
T  17451516 aagggatagaatctttgcactttagggtatcttaatatatgatgg-agggtaat--taattcttaagatgatgttgctcttatgatgtgagattgtgatg 17451420  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgag--tttttagtcttaaaa- 238  Q
    ||||| | ||| ||||  |||| |||||||||||||||||||||||||||||||||| ||||||||| || ||| | |||||  ||||||| |||||||     
T  17451419 agagatttatgatgaaagaatt-aaaagatgaagttgaaagatgagaattgaggaaagctagtttaggtt-tttaagttgagtttttttagccttaaaaa 17451322  T
Q  239 -agagaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatca 293  Q
     || | ||||||| |||||||||  |   |||||||||||||||||||| ||||||    
T  17451321 tagtggataatctggtaggttaactaagagttagtgtttgaatgatagggtaatca 17451266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 21995769 - 21995844
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  21995769 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 21995844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 293
Target Start/End: Complemental strand, 15544287 - 15544157
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttga-gtttttagtcttaaaaaga--gaataatctagtaggttaaa 261  Q
    |||||||||||||||||||||| || ||||  ||||||||||| | | ||||| ||||  ||||||| ||||||||||  | ||||||| |||||||||     
T  15544287 aaaagatgaagttgaaagatgataactgagagaaactagttta-tattttttaattgacttttttagccttaaaaagagtggataatctggtaggttaac 15544189  T
Q  262 aattggttagtgtttgaatgataggttaatca 293  Q
    ||    ||||||||||| ||||||| ||||||    
T  15544188 aaagaattagtgtttgattgatagggtaatca 15544157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 42 - 242
Target Start/End: Complemental strand, 16257 - 16060
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||| |  ||||| || |||||||||||| |||||||    
T  16257 taagggggagaatctttgtactttagggtatcttaatttatgatgggagggtcgtcttaaattttaatacattgttgcttttatgatgtgaattttgatg 16158  T
Q  142 agagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga 241  Q
    || |||||||| ||||| ||||| ||||||||| ||||||||||| ||||||||||||||||||||  || ||| | ||||| |||||||||||||||||    
T  16157 agtgaatgatgatgaacgaattg-aaagatgaaattgaaagatgacaattgaggaaaactagtttaagtt-tttgaattgag-ttttagtcttaaaaaga 16061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 44 - 260
Target Start/End: Original strand, 11838 - 12053
Alignment:
Q  44 agggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgag 143  Q
    |||| |||||||||||||||||||||| || |||| |||||| |||||||||| ||||||||||| |||||||| |||||||||||| || |||||||||    
T  11838 agggggagaatctttgcactttagggtgtcgtaatttatgataggagggttgtattaaattttaatatgttgttgctgttatgatgtaaattttgatgag 11937  T
Q  144 agaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga-- 241  Q
    | | | ||| ||||| |||| |||||||||||||||| |||||||| |||||||||||||||||| || ||| | ||||| ||||||| |||||||||      
T  11938 aaatttatgatgaacgaatt-aaaagatgaagttgaatgatgagaaatgaggaaaactagtttaggtt-tttgaattgag-ttttagttttaaaaagagt 12034  T
Q  242 gaataatctagtaggttaa 260  Q
    | ||||||| |||||||||    
T  12035 ggataatctggtaggttaa 12053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 21977209 - 21977092
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatg 149  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |  ||||| ||||||||||||||| ||||||||| |||||    
T  21977209 agaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgatgagtgaatg 21977110  T
Q  150 atggtgaacaaattgaaa 167  Q
    ||| ||||| ||||||||    
T  21977109 atgatgaacgaattgaaa 21977092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 21999640 - 21999523
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatg 149  Q
    ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |  ||||| ||||||||||||||| ||||||||| |||||    
T  21999640 agaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaattttaatacattgttgctgttatgatgtgaattttgatgagtgaatg 21999541  T
Q  150 atggtgaacaaattgaaa 167  Q
    ||| ||||| ||||||||    
T  21999540 atgatgaacgaattgaaa 21999523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 22161835 - 22161718
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatg 149  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |  ||||| ||||||||||||||| ||||||||| |||||    
T  22161835 agaatctttgcactttagggtatcttaatttatgatggaagggttgtcttaaatttgaatacattgttgctgttatgatgtgaattttgatgagtgaatg 22161736  T
Q  150 atggtgaacaaattgaaa 167  Q
    |||  |||| ||||||||    
T  22161735 atgaagaacgaattgaaa 22161718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 49 - 165
Target Start/End: Complemental strand, 19186887 - 19186771
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 148  Q
    |||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |  ||||| ||||||||||||||| |||||| || ||||    
T  19186887 gagaatctttgcactttagggtatcttaatttatgatgggtgggtcgtcttaaattttaatacattgttgctgttatgatgtgaattttgatcagtgaat 19186788  T
Q  149 gatggtgaacaaattga 165  Q
    |||| ||||| ||||||    
T  19186787 gatgatgaacgaattga 19186771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 16357828 - 16357985
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaat 148  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||     | || |||||||||||| ||  |||||||| ||||    
T  16357828 gagaatctttgcactttagggtatcttaatttatgatggga-ggttgtcttaaattttaatgcacttttgctgttatgatgtaaatgttgatgagtgaat 16357926  T
Q  149 gatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
    |||| || || ||||| ||||||||| || |||||||| |||||||| ||||||||||||    
T  16357927 gatgatggacgaattg-aaagatgaaattaaaagatgacaattgagggaaactagtttag 16357985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 42 - 148
Target Start/End: Complemental strand, 10341168 - 10341062
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| |||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||| | ||||||  |||||||||| ||| |||||||    
T  10341168 taagggggagaatatttgcactttagggtatcttaatctatggtgggaggattgtcttaaattttaataagttgttgatgttatgatgagaattttgatg 10341069  T
Q  142 agagaat 148  Q
    |||||||    
T  10341068 agagaat 10341062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 49 - 129
Target Start/End: Complemental strand, 10302824 - 10302744
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatg 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||  ||||||||||    
T  10302824 gagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaataagttgttgatgttatgatg 10302744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 117
Target Start/End: Complemental strand, 16928662 - 16928586
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgg-gagggttgtcttaaattttaaaatgttgtt 117  Q
    ||||||||||||| ||| |||||||  |||||||||||||||||||  |||||||||||||||||||| ||||||||    
T  16928662 taagggagagaatattttcactttaaagtatcttaatctatgatggaaagggttgtcttaaattttaatatgttgtt 16928586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 27868366 - 27868419
Alignment:
Q  146 aatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaac 200  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||    
T  27868366 aatgatgatgaacaaattgaaa-gatgaagttaaaagatgagaattgaggaaaac 27868419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 291
Target Start/End: Complemental strand, 10341048 - 10340933
Alignment:
Q  176 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagtg 273  Q
    ||||||||||||||||||||||||||||||||  || ||| | ||||| |||||||||| ||||||  | ||||||  |||||||||  |    ||||||    
T  10341048 ttgaaagatgagaattgaggaaaactagtttaagtt-tttgaattgag-ttttagtctttaaaagagtggataatccggtaggttaacgaagaattagtg 10340951  T
Q  274 tttgaatgataggttaat 291  Q
    ||||||||||||||||||    
T  10340950 tttgaatgataggttaat 10340933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Original strand, 52988963 - 52989038
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| |||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  52988963 aaaagatgaaattgaaagttgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 52989038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 10302723 - 10302605
Alignment:
Q  176 ttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaaga--gaataatctagtaggttaaaaattggttagtg 273  Q
    |||||||||||||||||||||||||||||||    | ||| | ||||| |||||||||| ||||||  | ||||||| |||||||||  |    ||||||    
T  10302723 ttgaaagatgagaattgaggaaaactagttttaagtttttgaattgag-ttttagtctttaaaagagtggataatctggtaggttaacgaagaattagtg 10302625  T
Q  274 tttgaatgataggttaatca 293  Q
    ||||||||||||| ||||||    
T  10302624 tttgaatgatagggtaatca 10302605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 165 - 208
Target Start/End: Complemental strand, 14967131 - 14967088
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttag 208  Q
    |||||||||| ||||||| |||||||| ||||||||||||||||    
T  14967131 aaaagatgaaattgaaagttgagaattaaggaaaactagtttag 14967088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 50 - 167
Target Start/End: Complemental strand, 12060 - 11943
Alignment:
Q  50 agaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatgagagaatg 149  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||    ||||| ||||||||||||||| |||||||||||||||    
T  12060 agaatatttgcactttagggtatcttaatttatgatgggagggttgtcttaaattttaattcattgttgctgttatgatgtgaattttgatgagagaatg 11961  T
Q  150 atggtgaacaaattgaaa 167  Q
    ||| ||||| ||| ||||    
T  11960 atgatgaacgaatagaaa 11943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 178 - 242
Target Start/End: Complemental strand, 11946 - 11883
Alignment:
Q  178 gaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    ||||||||| ||||||| ||||||||||||| || ||| | ||||||||||||||||||||||||    
T  11946 gaaagatgaaaattgagtaaaactagtttagatt-tttgaattgagtttttagtcttaaaaagag 11883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0207 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0207
Description:

Target: scaffold0207; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 42 - 201
Target Start/End: Original strand, 740 - 897
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaa-aatgttgttactgttatgatgtgaactttgat 140  Q
    |||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||  |||||||| ||||||||||| | | | |||     
T  740 taagggggagaa-ctttgcactttagggtatcttaatctatgattggagggttgtctttaattttaattatgttgttgctgttatgatgag-attatgac 837  T
Q  141 gagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaact 201  Q
    |||||| | ||| ||||| ||||  ||||| ||||||||||||||||||||||||||||||    
T  838 gagagatttatgatgaacgaatt-caaagacgaagttgaaagatgagaattgaggaaaact 897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 129
Target Start/End: Complemental strand, 14675 - 14588
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatg 129  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||| |||||||||||    
T  14675 taagggggagaatctttgcactttagggtatcttaatctatgatgggagggttgtctttaatttcaatatgttgttgctgttatgatg 14588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 14566 - 14532
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaa 199  Q
    |||||||||||||||||||||||||| ||||||||    
T  14566 aaaagatgaagttgaaagatgagaatagaggaaaa 14532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 147 - 298
Target Start/End: Complemental strand, 18159 - 17999
Alignment:
Q  147 atgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagtttag---------tttgttttatttgagtttttagtcttaaa 237  Q
    |||||| ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||         ||| ||||| || ||||||||||||||||    
T  18159 atgatgatgaacgaattaaaaagatgaagttgaaagacgagaattgaggaaaactagtttagttttttgttttttttttaattaagtttttagtcttaaa 18060  T
Q  238 aaga--gaataatctagtaggttaaaaattggttagtgtttgaatgataggttaatcacagag 298  Q
    ||||  ||||||||  ||||||||| || ||  |||||||||||||||||| |||||||||||    
T  18059 aagaatgaataatc-cgtaggttaacaaatgactagtgtttgaatgatagg-taatcacagag 17999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0094 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0094
Description:

Target: scaffold0094; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 42 - 167
Target Start/End: Original strand, 2502 - 2621
Alignment:
Q  42 taagggagagaatctttgcactttagggtatcttaatctatgatgggagggttgtcttaaattttaaaatgttgttactgttatgatgtgaactttgatg 141  Q
    |||||| ||||||||||||| |||||||||||||||||||||||  |||||     ||| ||||||| |||||||| ||| ||||||||||| ||||| |    
T  2502 taagggggagaatctttgca-tttagggtatcttaatctatgatatgaggg-----ttatattttaatatgttgttgctggtatgatgtgaattttgacg 2595  T
Q  142 agagaatgatggtgaacaaattgaaa 167  Q
    ||| ||||||| ||||  ||||||||    
T  2596 agaaaatgatgatgaaagaattgaaa 2621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0686 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0686
Description:

Target: scaffold0686; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 1386 - 1311
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| |||||||||||||||| |||||||||||||||| |  ||  | |||||||| |||||||||||||||    
T  1386 aaaagatgaaattgaaagatgagaattaaggaaaactagtttaggt--ttcgaattgagtttctagtcttaaaaagag 1311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0395 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0395
Description:

Target: scaffold0395; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 242
Target Start/End: Complemental strand, 11836 - 11761
Alignment:
Q  165 aaaagatgaagttgaaagatgagaattgaggaaaactagtttagtttgttttatttgagtttttagtcttaaaaagag 242  Q
    |||||||||| ||||||| | |||||| |||||||||||||||| |  ||| | |||||||| |||||||||||||||    
T  11836 aaaagatgaaattgaaagctaagaattaaggaaaactagtttaggt--tttgaattgagtttctagtcttaaaaagag 11761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 207
Target Start/End: Original strand, 11579 - 11666
Alignment:
Q  120 tgttatgatgtgaactt-tgatgagagaatgatggtgaacaaattgaaaagatgaagttgaaagatgagaattgaggaaaactagttta 207  Q
    |||||||||||||  || |||||||||| | ||| | ||| |||| |||||||| || ||||||||||||||||| |||||||||||||    
T  11579 tgttatgatgtgagattgtgatgagagatttatgataaacgaatt-aaaagatgcagatgaaagatgagaattgaagaaaactagttta 11666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0381; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 84
Target Start/End: Original strand, 11518 - 11553
Alignment:
Q  49 gagaatctttgcactttagggtatcttaatctatga 84  Q
    |||||||||||||||||||||||||||||| |||||    
T  11518 gagaatctttgcactttagggtatcttaatatatga 11553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 16586 - 16631
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagg 46  Q
    |||||||||| ||||||| |||| |||||||||||| |||||||||    
T  16586 caagtagtgattgttccagcttacgttgtagatgacgctcttaagg 16631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 25644 - 25689
Alignment:
Q  1 caagtagtgactgttccaacttatgttgtagatgacactcttaagg 46  Q
    |||||||||| ||||||| |||| |||||||||||| |||||||||    
T  25644 caagtagtgattgttccagcttacgttgtagatgacgctcttaagg 25689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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