View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16872_low_2 (Length: 260)

Name: NF16872_low_2
Description: NF16872
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16872_low_2
NF16872_low_2
[»] chr7 (16 HSPs)
chr7 (9-229)||(4636533-4636753)
chr7 (107-242)||(4784027-4784162)
chr7 (107-242)||(4816456-4816591)
chr7 (107-234)||(4863690-4863817)
chr7 (69-159)||(4712350-4712437)
chr7 (112-234)||(4630700-4630822)
chr7 (78-147)||(4846299-4846365)
chr7 (98-147)||(4643445-4643494)
chr7 (181-234)||(4846215-4846268)
chr7 (98-158)||(4672435-4672495)
chr7 (187-234)||(4697390-4697437)
chr7 (98-144)||(4666694-4666740)
chr7 (112-158)||(4697466-4697512)
chr7 (184-226)||(4647378-4647420)
chr7 (189-234)||(4672526-4672571)
chr7 (177-229)||(4661636-4661688)
[»] chr4 (1 HSPs)
chr4 (98-155)||(18926021-18926078)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 9 - 229
Target Start/End: Original strand, 4636533 - 4636753
Alignment:
Q  9 gagatgaaactccaactatgactatggttgacttcttggactttgattttttagatgaaagtataatgtgtttgttgggattcaaaccagcgagattgtt 108  Q
    ||||||||||||||||||||||||  ||||||||||||||||||  ||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  4636533 gagatgaaactccaactatgactacagttgacttcttggacttttgtttttgagatgatagtataatgtgtttgttgggattcaaaccagcgagattgtt 4636632  T
Q  109 atatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaaga 208  Q
    |||||||||||| ||||| ||||||||||||||||| |   | ||||||||||| || |||||||| | || |||||||||||| |||||||| ||||||    
T  4636633 atatttatcactaattttgaaaatctcgattccattaagaataacatcacgatatactgtaggcatgggttgtggtaatcgttgaagcttgattgaaaga 4636732  T
Q  209 ttaactttttcaatttgagag 229  Q
    | |||| ||||||||||||||    
T  4636733 taaactctttcaatttgagag 4636753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 4784162 - 4784027
Alignment:
Q  107 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 206  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  4784162 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgtaggcataggttttggtaatcgttgtagcttgatcgaaa 4784063  T
Q  207 gattaactttttcaatttgagagcttccgccttgag 242  Q
    ||||||||||||||||||||||||||||||||||||    
T  4784062 gattaactttttcaatttgagagcttccgccttgag 4784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 4816591 - 4816456
Alignment:
Q  107 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 206  Q
    |||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| |||||||||||| ||||||||||||||||    
T  4816591 ttatttttatcacttattttcaaaatctcaattccattcaacgtgacatcacgatataccgaaggcataggttttggtaatcgatgtagcttgatcgaaa 4816492  T
Q  207 gattaactttttcaatttgagagcttccgccttgag 242  Q
    ||||||||||||||||||||||||||||||| ||||    
T  4816491 gattaactttttcaatttgagagcttccgccatgag 4816456  T

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Target: chr7; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 107 - 234
Target Start/End: Original strand, 4863690 - 4863817
Alignment:
Q  107 ttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaa 206  Q
    |||| |||||| |||||||| ||||||||||||||||||||||| |||||||| ||    |||  ||| |  ||||||||| |||||| ||||| |||||    
T  4863690 ttatttttatcgcttattttaaaaatctcgattccattcaacgtaacatcacggtattttgtaaacatggtctttggtaattgttgtaacttgagcgaaa 4863789  T
Q  207 gattaactttttcaatttgagagcttcc 234  Q
    | |||||| |||||||||||||||||||    
T  4863790 ggttaactctttcaatttgagagcttcc 4863817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 69 - 159
Target Start/End: Complemental strand, 4712437 - 4712350
Alignment:
Q  69 gtataatgtgtttgttgggattcaaaccagcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcacg 159  Q
    |||||||||||||| ||||||||||||||||||||   |||| ||||||||||||||| |||||||| ||||||||||   ||||||||||    
T  4712437 gtataatgtgtttgatgggattcaaaccagcgaga---ttatttttatcacttattttgaaaatctcaattccattcattatgacatcacg 4712350  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 112 - 234
Target Start/End: Original strand, 4630700 - 4630822
Alignment:
Q  112 tttatcacttattttcaaaatctcgattccattcaacgtgacatcacgatacaccgtaggcatagattttggtaatcgttgtagcttgatcgaaagatta 211  Q
    ||||||||||||||| |||||||| |||||||||| |  |||||||||||| |  ||  | |||| || ||||  |||| | |||||||| |||||||||    
T  4630700 tttatcacttattttgaaaatctcaattccattcagcaggacatcacgatatattgtgtgtatagtttctggtgctcgtcgaagcttgattgaaagatta 4630799  T
Q  212 actttttcaatttgagagcttcc 234  Q
    ||| |||||||||||||||||||    
T  4630800 actctttcaatttgagagcttcc 4630822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 78 - 147
Target Start/End: Complemental strand, 4846365 - 4846299
Alignment:
Q  78 gtttgttgggattcaaaccagcgagattgttatatttatcacttattttcaaaatctcgattccattcaa 147  Q
    ||||||||||||||| |||||| ||||||||   ||||||||||| ||| ||||||||||||||||||||    
T  4846365 gtttgttgggattcataccagccagattgtt---tttatcacttactttgaaaatctcgattccattcaa 4846299  T

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Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 4643445 - 4643494
Alignment:
Q  98 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaa 147  Q
    ||||||||||||| ||| ||||||||||| ||||||||||||||||||||    
T  4643445 gcgagattgttatttttgtcacttatttttaaaatctcgattccattcaa 4643494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 234
Target Start/End: Complemental strand, 4846268 - 4846215
Alignment:
Q  181 tggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 234  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| |||||||||    
T  4846268 tggtaatcgttgaagcttgattgaaagattaactctttcaatttcagagcttcc 4846215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 158
Target Start/End: Original strand, 4672435 - 4672495
Alignment:
Q  98 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacatcac 158  Q
    |||||||| |||| ||||||||||| ||| ||||||||||||||||| || ||||||||||    
T  4672435 gcgagattattatttttatcacttactttgaaaatctcgattccatttaatgtgacatcac 4672495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 234
Target Start/End: Complemental strand, 4697437 - 4697390
Alignment:
Q  187 tcgttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 234  Q
    ||||||||||||||| |||||||||| | |||||||||||||||||||    
T  4697437 tcgttgtagcttgattgaaagattaagtctttcaatttgagagcttcc 4697390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 144
Target Start/End: Original strand, 4666694 - 4666740
Alignment:
Q  98 gcgagattgttatatttatcacttattttcaaaatctcgattccatt 144  Q
    ||||||||||||| ||| ||||||||||| |||||||||||||||||    
T  4666694 gcgagattgttatttttgtcacttatttttaaaatctcgattccatt 4666740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 4697512 - 4697466
Alignment:
Q  112 tttatcacttattttcaaaatctcgattccattcaacgtgacatcac 158  Q
    ||||||| ||||||||||||||||||| |||||||| ||||||||||    
T  4697512 tttatcatttattttcaaaatctcgatgccattcaatgtgacatcac 4697466  T

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Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 4647378 - 4647420
Alignment:
Q  184 taatcgttgtagcttgatcgaaagattaactttttcaatttga 226  Q
    ||||||||| |||||||| |||||||||||| |||||||||||    
T  4647378 taatcgttgaagcttgattgaaagattaactctttcaatttga 4647420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 4672526 - 4672571
Alignment:
Q  189 gttgtagcttgatcgaaagattaactttttcaatttgagagcttcc 234  Q
    |||| ||||| || |||||||||||| |||||||||||||||||||    
T  4672526 gttgaagcttaatagaaagattaactctttcaatttgagagcttcc 4672571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 4661636 - 4661688
Alignment:
Q  177 attttggtaatcgttgtagcttgatcgaaagattaactttttcaatttgagag 229  Q
    |||||| |||| |||| |||||||| ||||||| |||| ||||||||||||||    
T  4661636 attttgataatggttgaagcttgattgaaagatcaactctttcaatttgagag 4661688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 18926078 - 18926021
Alignment:
Q  98 gcgagattgttatatttatcacttattttcaaaatctcgattccattcaacgtgacat 155  Q
    ||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||    
T  18926078 gcgagattgttatttttgtcacttattttcaaaatctcgatcccattcaatgtgacat 18926021  T

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