View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16873_high_1 (Length: 444)
Name: NF16873_high_1
Description: NF16873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16873_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 444
Target Start/End: Original strand, 47245531 - 47245960
Alignment:
| Q |
18 |
aaaggtcgaatgagattaaatgaatatataaatacaactaatgaaggaatcagttgaaaatctgataacttatgcgggctaaccgctttaggaatcaaag |
117 |
Q |
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| T |
47245531 |
aaaggtcgaatgagattaaataaacatataaatacaactaatgatggaatcagttgaaaatctgataacttatgcgggctaaccgctttaggaatcaaag |
47245630 |
T |
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| Q |
118 |
tcatgaatgtgcaattagatcttcaattaacatatttgtgcaagaaatttatctcttaaggtgaatcataggtttgaacctcgacaactacatatttaat |
217 |
Q |
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| T |
47245631 |
tcatgaatgcgcaattagatcttcaattaacatatttgtgcaagaaatttatctcttaaggtgaatcataggtttgaacctcgacaactacatatttaat |
47245730 |
T |
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| Q |
218 |
gcaatgtccctacctactaatttaaactcatggggactgaaataaatttaaaatgcttattttaattcaatcgccacaaatttgatctcagtttgagata |
317 |
Q |
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| T |
47245731 |
gtaatgtccctacctactaatttaagttcatggggactgaaataaatttaaaatgcttattttaattcaatcgccacaaatttgatctcagtttgagata |
47245830 |
T |
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| Q |
318 |
aaagaagattaaaatccccaattaaatcgtggtaattaccagctccataactccattcattttttgtctggat---caacatcccttgtaacacacaagg |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
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| T |
47245831 |
aaagaagattaaaatccccaattaaatcgtggtaattaccagctccataactccattcattttttgtctggatcaacaacatcccttgtaacacataagg |
47245930 |
T |
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| Q |
415 |
ccattcaccttcacccaaccttccatctca |
444 |
Q |
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| T |
47245931 |
ccattcaccttcacccaaccttccatctca |
47245960 |
T |
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