View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16873_high_4 (Length: 359)
Name: NF16873_high_4
Description: NF16873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16873_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 36193230 - 36192889
Alignment:
| Q |
1 |
cacagaccccaaagtctcaccgggcctaagcggatacgtaacaaacaacgcataattcccaacatcactatccccacaagaacaattaacagtaacattc |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36193230 |
cacagacaccaaagtctcaccgggcctaagcggataagtaacaaacaaggcataattcccaacatcagcatccccacaagaacaattaacagtaacattc |
36193131 |
T |
|
| Q |
101 |
aacgttccagtatcaggaatatcattcggtggataagtattaaacctcctcaaccattcaacatttgttaagttagcataattatttgtagcaacagttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36193130 |
aacgttccagtatcaggaatatcattcggtggataagtattaaacctcctcaaccattcaacatttgttaagttagcataattatttgtagcaacagttt |
36193031 |
T |
|
| Q |
201 |
cataagtgtcgcccgtttcaacatcgtagctaaacttgtgaccgagaaactcgccgtcaatacaatcacatgggaatggaacgttgagtctttgaccagc |
300 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
36193030 |
cataagtgtcgccagtttcaacatcgtagctaaacttgtgaccgagaaactggccgtcgatacaatcacaagggaatggaacgttgagtctttgaccagc |
36192931 |
T |
|
| Q |
301 |
ttgaacactgtctttactaggtattatttcgcggctgtattc |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36192930 |
ttgaacactgtctttactaggtattatttcgcggctgtattc |
36192889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 37196076 - 37196002
Alignment:
| Q |
61 |
aacatcactatccccacaagaacaattaacagtaacattcaacgttccagtatcaggaatatcattcggtggata |
135 |
Q |
| |
|
||||||||| | |||||| |||||||||||||||||||| | ||||||||||||||||||||||| | |||||| |
|
|
| T |
37196076 |
aacatcactgttcccacatgaacaattaacagtaacattaagagttccagtatcaggaatatcatttgatggata |
37196002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University