View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16873_low_3 (Length: 371)
Name: NF16873_low_3
Description: NF16873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16873_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 40363186 - 40363536
Alignment:
| Q |
16 |
gaaatcactagtattaaattaaaaacgcgaacgagataagcatattagtacaatattttaatcatagctaggaaatatgcaagcatctaatacatcactg |
115 |
Q |
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| T |
40363186 |
gaaatcactagtattaaattaaaaacgcgaacgagataagcatattagtacaatattttaatcatagctaggaaatatgcaagcatctaatacatcactg |
40363285 |
T |
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| Q |
116 |
gataatcctctggcgttcaatggatgtagcaaagaaatggaaattaactgattcagagtattcactacttagttaaaaatgatcagcatagtcttgttca |
215 |
Q |
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| T |
40363286 |
gataatcctctggcgttcaatggatgtagcaaagaaatggaaattaactgattaagaatattcactacttagttaaaaatgatcagcatagtcttgttca |
40363385 |
T |
|
| Q |
216 |
tgatcttgtacatttgaagagacttcaatgttgttactggaacttgagcatgaagaggatgtagaagaacatgtcttattgtttaccatcataaaatcaa |
315 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
40363386 |
tgatcttgtacatttgaagagacctcaatgttattactggaacttgagcatgaagaggatgtagaagaacatgtcttgttgtttaccatcataaaatcaa |
40363485 |
T |
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| Q |
316 |
acattaatcttgaattaggagtactagtgcttccatattctaaaccacttc |
366 |
Q |
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| T |
40363486 |
acattaatcttgaattaggagtactagtgcttccatattctaatccacttc |
40363536 |
T |
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