View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16873_low_5 (Length: 343)
Name: NF16873_low_5
Description: NF16873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16873_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 34555538 - 34555204
Alignment:
| Q |
9 |
acatcatcagatgccaatcatattcatcatttataaaacataatttatattcagaataaggatacaagattgcttcttcttcaagggactaaaattacat |
108 |
Q |
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| T |
34555538 |
acatcatcagatgccaatcatattcatcatttataaaacatcatttatattcagaataaggatacaaggttgcttcttcttcaagggactaaaattacat |
34555439 |
T |
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| Q |
109 |
gataacttgcatgaaaacatgctgcaacctacaaaaaagaatacaaaagctctatttataatccataccatcaagaacgactttgaagcacatagttagt |
208 |
Q |
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| T |
34555438 |
gataacttgcatgaaaacatgctgcaacctacaaaaaagaatacaaaagctctatttataatccataccatcaagaacgactttgaagcacatagttagt |
34555339 |
T |
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| Q |
209 |
cctgttatcttttgaggctcttggcaaggaagataattccaacacagcatcacttgtctcgcttggattccagcagctactctcaaaataaattgtggtt |
308 |
Q |
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| T |
34555338 |
cctgttatcttttgaggctcttggcaaggaagataattccaacacagcatcacttgtctcgcttggattccagcagctactctcaaaataaattgtggtt |
34555239 |
T |
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| Q |
309 |
ctcttaagcacttttccactatttaaaatgtaact |
343 |
Q |
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| T |
34555238 |
ctcttaagcacttttccactatttaaaatgtaact |
34555204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 208 - 340
Target Start/End: Complemental strand, 36284472 - 36284343
Alignment:
| Q |
208 |
tcctgttatcttttgaggctcttggcaaggaagataattccaacacagcatcacttgtctcgcttggattccagcagctactctcaaaataaattgtggt |
307 |
Q |
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| T |
36284472 |
tcctgttatcttttgaggcttttggcaaggaacataattccgacacagcatctcttgcctcgcttgg-ttcc--cagctacttccgaaataaattgtggt |
36284376 |
T |
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| Q |
308 |
tctcttaagcacttttccactatttaaaatgta |
340 |
Q |
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| T |
36284375 |
cctctcaagcacttttccactcttcaaaatgta |
36284343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 76
Target Start/End: Original strand, 31809421 - 31809488
Alignment:
| Q |
9 |
acatcatcagatgccaatcatattcatcatttataaaacataatttatattcagaataaggatacaag |
76 |
Q |
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|||| |||||||||||||||||||||||||||| |||| |||||||| ||||||||||| |||||||| |
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| T |
31809421 |
acattatcagatgccaatcatattcatcatttacaaaatataatttacattcagaataaagatacaag |
31809488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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