View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16873_low_6 (Length: 337)
Name: NF16873_low_6
Description: NF16873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16873_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 136 - 319
Target Start/End: Original strand, 48466600 - 48466783
Alignment:
| Q |
136 |
catttttgttaaggggtctgaaaatcattatggtttttcaacatgattaaaacattttctgtatcctatagaacagacaagactcacaaagagaatatta |
235 |
Q |
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| T |
48466600 |
catttttgttaaggggtctgaaaatcattatggtttttcaacatgattaaaacattttctgtatcctatagaacagacaagactcacaaagagaatatta |
48466699 |
T |
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| Q |
236 |
gcgatcttgacaagaacgacggaaggtaccattggacagctcgttacaagctcgtgcgctgacggcaaggtgagatgtgagaca |
319 |
Q |
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| T |
48466700 |
gcgatcttgacaagaacgacggaaggtaccattggacagctcgttacaagctcgtgcgctgacgacaaggtgagatgtgagaca |
48466783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 15 - 97
Target Start/End: Original strand, 48466491 - 48466573
Alignment:
| Q |
15 |
acagaaccaactaatttttaatgtctaattgtacctacaatttaaggatttctagactctataatatttgtaaacttacacac |
97 |
Q |
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| T |
48466491 |
acagaaccaactaatttttaatgtctaattgtacctacaatttaaggatttctagactctataatatttgtaaacttacacac |
48466573 |
T |
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