View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16873_low_8 (Length: 219)
Name: NF16873_low_8
Description: NF16873
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16873_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 30805343 - 30805157
Alignment:
| Q |
16 |
caaagggacaaagaaaaggcaagtataattagcgagagcagtcgaaacacacaatattcttctatgagtcctcttccagcaagttctcaatgaaagttcc |
115 |
Q |
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| T |
30805343 |
caaaaggacaaagaaaatgcaggtataattagcgagagcagtcgaaacacacaatattcttctatgagtcctcttccagcaagttctcaatgaaagttcc |
30805244 |
T |
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| Q |
116 |
tttactagaacattgagaggataggcagctctgagtctcaaagttaccttacataaaatctagtttagttagagaaggtactccctc |
202 |
Q |
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|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
30805243 |
tttactagaacattcagaggataggcatctctgagtctcaaagttaccttacataaaatctggtttagttagagaaggtattccctc |
30805157 |
T |
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