View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16874_high_1 (Length: 557)
Name: NF16874_high_1
Description: NF16874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16874_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 7731664 - 7731131
Alignment:
| Q |
20 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcg |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| |||||||| ||| ||| ||||||||| || || |||||| ||||||| ||||| |
|
|
| T |
7731664 |
aaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcg |
7731565 |
T |
|
| Q |
117 |
tcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctccc |
216 |
Q |
| |
|
|||| || || | ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
7731564 |
tcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagtagagtttggcgacctccc |
7731465 |
T |
|
| Q |
217 |
ttatcttaacttcctctcattggccgaaatgccgaaagtaactgggccaattcctaactctttcagcaaactgaaaagactacaaaaacttgaccttggt |
316 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7731464 |
ttatcttaacttcctctcattagccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactcaaaagactacaaaaacttgaccttggt |
7731365 |
T |
|
| Q |
317 |
tccaacagtcttagtggtccgatccccacttttctaggccagttggagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccgg |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7731364 |
tccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccgg |
7731265 |
T |
|
| Q |
417 |
cgtcgtttggctccataccgtctctttcgcagtttaatgtcagctttaaccagctgtgtggtgcgatccctactgggctgaacaagtttgcaaagagttc |
516 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||||||||| |
|
|
| T |
7731264 |
cgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgctatccctactggattgagcaagtttgcaaagagttc |
7731165 |
T |
|
| Q |
517 |
gtttgatcataataaatgcctctgtgctgctcct |
550 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7731164 |
gtttgatcataataaatgcctttgtggtgctcct |
7731131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 7727504 - 7726971
Alignment:
| Q |
20 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcg |
116 |
Q |
| |
|
|||||| | ||||||||||||||||||||||| |||||||| |||||||| || ||| |||||||||| || || |||||| ||||||| ||||| |
|
|
| T |
7727504 |
aaagccactctcctcaaaatcagagaccatttcggcggccccaacggccgcctctccgattgggacaacagtacagactgttgtagcgactggagcttcg |
7727405 |
T |
|
| Q |
117 |
tcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctccc |
216 |
Q |
| |
|
|||| || |||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
7727404 |
tcgggtgtggcaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttctggtacgcttccagcagagtttggcgacctccc |
7727305 |
T |
|
| Q |
217 |
ttatcttaacttcctctcattggccgaaatgccgaaagtaactgggccaattcctaactctttcagcaaactgaaaagactacaaaaacttgaccttggt |
316 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||| || ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7727304 |
atatcttaacttcctctcattggctgaaatgcccaaagtaaccggaccaatccctaactctttcagcaaactcaaaagactacaaaaacttgaccttggt |
7727205 |
T |
|
| Q |
317 |
tccaacagtcttagtggtccgatccccacttttctaggccagttggagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccgg |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7727204 |
tccaacagtcttagtgggccgatccccacttttctaggccagttgaagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattcccg |
7727105 |
T |
|
| Q |
417 |
cgtcgtttggctccataccgtctctttcgcagtttaatgtcagctttaaccagctgtgtggtgcgatccctactgggctgaacaagtttgcaaagagttc |
516 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |
|
|
| T |
7727104 |
cgtcgttcggctccataccgtctctttcgcagtttaatgtcagctttaaccaactgtgtggtgcgatacctactgggttgaacaagtttgcaaagagttc |
7727005 |
T |
|
| Q |
517 |
gtttgatcataataaatgcctctgtgctgctcct |
550 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7727004 |
gtttgatcataataaatgcctttgtggtgctcct |
7726971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 7713984 - 7713454
Alignment:
| Q |
20 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttcgtcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
7713984 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttcgtag |
7713885 |
T |
|
| Q |
120 |
gttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctccctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
7713884 |
gttgcggcagaccttatcctggccgagtcaccggcgtcaccatcggccgtggctggggtctttccggtacacttccagcggagtttggcgacctccctta |
7713785 |
T |
|
| Q |
220 |
tcttaacttcctctcattggccgaaatgccgaaagtaactgggccaattcctaactctttcagcaaactgaaaagactacaaaaacttgaccttggttcc |
319 |
Q |
| |
|
||||| | | |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| || |||||||| ||| |
|
|
| T |
7713784 |
tcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactctttcagcaaactcaaaagactagaaaatctcgaccttggctcc |
7713685 |
T |
|
| Q |
320 |
aacagtcttagtggtccgatccccacttttctaggccagttggagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccggcgt |
419 |
Q |
| |
|
||||| |||||||| || ||||| ||||| ||| ||||| || || | || ||| |||||||||| |||||| |||||||||||| ||||||||||| |
|
|
| T |
7713684 |
aacagccttagtgggccaatccctgaatttctgggcaagttgaagcgcctccaagaggttgatttgtccaacaacaagttatccggtgctattccggcgt |
7713585 |
T |
|
| Q |
420 |
cgtttggctccataccgtctctttcgcagtttaatgtcagctttaaccagctgtgtggtgcgatccctactgggctgaacaagtttgcaaagagttcgtt |
519 |
Q |
| |
|
|| | | | | ||| ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
7713584 |
cgctcgacaacctacagtctctttcgcagttcaatgttagctttaaccagctctgtggtgcgatccctactgggttgagcaagtttgcaaagagttcgtt |
7713485 |
T |
|
| Q |
520 |
tgatcataataaatgcctctgtgctgctcct |
550 |
Q |
| |
|
||| |||||||||||||| |||| ||||||| |
|
|
| T |
7713484 |
tgagcataataaatgcctttgtgatgctcct |
7713454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 7739822 - 7739289
Alignment:
| Q |
20 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgt---gactggaacttcg |
116 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| |||||||| ||| ||| ||||||||| || || |||||| ||||||| ||||| |
|
|
| T |
7739822 |
aaagccaccctcctcaaaatcagagaccatttcggcggccccaacggccgcctttccgattgggacaacggtacagactgttgtagcgactggagcttcg |
7739723 |
T |
|
| Q |
117 |
tcggttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctccc |
216 |
Q |
| |
|
|||| || || | ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |
|
|
| T |
7739722 |
tcgggtgtggtaaacccctacctggccgaatcaccgtcgtcaccatcagccgtggctggggtctttccggtacgctaccagcggagtttggcgaccttcc |
7739623 |
T |
|
| Q |
217 |
ttatcttaacttcctctcattggccgaaatgccgaaagtaactgggccaattcctaactctttcagcaaactgaaaagactacaaaaacttgaccttggt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
7739622 |
atatcttaacttcctctcattggccgaaatgcccaaagtaactgggccaattcctaactctttcagcaaactccaaagactacaaaaactcgaccttggt |
7739523 |
T |
|
| Q |
317 |
tccaacagtcttagtggtccgatccccacttttctaggccagttggagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccgg |
416 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
7739522 |
tccaacagtcttagtgggtcgatccccactttcctaggccagttgaagggcttacaggagtttgatttgtctaacaataagttaaccggtgttattccgg |
7739423 |
T |
|
| Q |
417 |
cgtcgtttggctccataccgtctctttcgcagtttaatgtcagctttaaccagctgtgtggtgcgatccctactgggctgaacaagtttgcaaagagttc |
516 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||| ||| ||| |||||||||||||| |
|
|
| T |
7739422 |
cgtcgttcggctccctaccgtctctttcccagtttaacgtcagctttaaccaactgtgtggtgctatccctactggattgagcaaatttgcaaagagttc |
7739323 |
T |
|
| Q |
517 |
gtttgatcataataaatgcctctgtgctgctcct |
550 |
Q |
| |
|
||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7739322 |
gtttgatcataataaatgcctttgtggtgctcct |
7739289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 20 - 550
Target Start/End: Complemental strand, 7699639 - 7699109
Alignment:
| Q |
20 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacggccgtcttgacgactgggacaacaacactgaatgttgtgactggaacttcgtcg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || || || ||||| || |||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
7699639 |
aaagccgccctcctcaaaatcagagaccatttcggtggtcccaaaggccgcctcgacgactgggacaacaacaccgaatgttgtgactggagcttcgtcg |
7699540 |
T |
|
| Q |
120 |
gttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcagagtttggcgacctccctta |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
7699539 |
gttgcggcagaccttatcctggccgagtcaccgtcgtcaccatcagccgtggctggggtctttccggtacgcttccagcggagtttggcaacctccctta |
7699440 |
T |
|
| Q |
220 |
tcttaacttcctctcattggccgaaatgccgaaagtaactgggccaattcctaactctttcagcaaactgaaaagactacaaaaacttgaccttggttcc |
319 |
Q |
| |
|
||||| | | |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||| || |||||||||||| |
|
|
| T |
7699439 |
tcttagcatgctctcattggccgaaatgccgaaagtaactgggccaatccctaactcttttagcaaactccaaagactacaaaatctagaccttggttcc |
7699340 |
T |
|
| Q |
320 |
aacagtcttagtggtccgatccccacttttctaggccagttggagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccggcgt |
419 |
Q |
| |
|
||||| |||||||| || |||||| | ||||||||| ||||| || || || ||||| ||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
7699339 |
aacagccttagtgggccaatcccctcctttctaggcaagttgaagcgcctaaaggaggttgatttgtctaacaacaagttatccggcactattccggcgt |
7699240 |
T |
|
| Q |
420 |
cgtttggctccataccgtctctttcgcagtttaatgtcagctttaaccagctgtgtggtgcgatccctactgggctgaacaagtttgcaaagagttcgtt |
519 |
Q |
| |
|
| | ||| | ||| |||||||||||||||||||| |||||||||||||| |||||||| || ||| ||||| |||| |||||| |||| | ||| |
|
|
| T |
7699239 |
cactcggcaacctacaatctctttcgcagtttaatgttagctttaaccagctctgtggtgcaattcctgctgggttgaagaagtttaacaagaatgtgtt |
7699140 |
T |
|
| Q |
520 |
tgatcataataaatgcctctgtgctgctcct |
550 |
Q |
| |
|
||| |||||||||||||| |||| ||||||| |
|
|
| T |
7699139 |
tgagcataataaatgcctttgtggtgctcct |
7699109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 255 - 542
Target Start/End: Original strand, 12908070 - 12908357
Alignment:
| Q |
255 |
taactgggccaattcctaactctttcagcaaactgaaaagactacaaaaacttgaccttggttccaacagtcttagtggtccgatccccacttttctagg |
354 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||| | | | || || | ||| ||||||| |||||||| ||||||||||| || ||||| |
|
|
| T |
12908070 |
taactgggccaatccctaactctttcagcaaactcaaaaaattgcgaagcctcaaacttaactccaacaaccttagtggcccgatccccaccttcctagg |
12908169 |
T |
|
| Q |
355 |
ccagttggagggcttacaggagtttgatttgtctaacaaccagttatccggtgttattccggcgtcgtttggctccataccgtctctttcgcagtttaat |
454 |
Q |
| |
|
|| |||| || ||||| | ||| ||||||||||||||||| ||||||||||||||||||| |||||| | | | || |||||||||| || ||||| ||| |
|
|
| T |
12908170 |
ccggttgaagcgcttagaagaggttgatttgtctaacaacaagttatccggtgttattccagcgtcgctcgccaccctaccgtctctctcccagttgaat |
12908269 |
T |
|
| Q |
455 |
gtcagctttaaccagctgtgtggtgcgatccctactgggctgaacaagtttgcaaagagttcgtttgatcataataaatgcctctgtg |
542 |
Q |
| |
|
|| |||| |||||| |||||||||||||| ||||||||| |||| ||||| | |||||| |||||| |||||||||||||| |||| |
|
|
| T |
12908270 |
gttagctctaaccatctgtgtggtgcgatacctactgggttgaagaagttggagaagagtatgtttgagcataataaatgcctttgtg |
12908357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 12907817 - 12907863
Alignment:
| Q |
20 |
aaagccgccctcctcaaaatcagagaccattttggcggccctaacgg |
66 |
Q |
| |
|
||||| || ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
12907817 |
aaagctgctctcctcaaaataagagaccatttcggcggccctaacgg |
12907863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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