View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16874_high_2 (Length: 270)
Name: NF16874_high_2
Description: NF16874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16874_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 257
Target Start/End: Original strand, 6068916 - 6069165
Alignment:
| Q |
8 |
agattatactatgtcctgattctaattcaactgccttcttcaactcttctttcctttgtgaatccaattccaattccggtaaaacactctccaattcttc |
107 |
Q |
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| T |
6068916 |
agattatactatgtcctgattctaattcaactgccttcttcaactcttctttccttggtgaatccaattccaattccagtaaaacactctccaagtcttc |
6069015 |
T |
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| Q |
108 |
aacacctacaagtcgtaccccgcactctttaataccaattgaaccatcaacttcccccatatcgtttgtaacacagaactcaaaacaaatctcaggttta |
207 |
Q |
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| T |
6069016 |
gacacctacaagtcgtaccccgcactctttaataccaattgaaccgtcaacttcccccatatcgtttgtaacacagaactcaaaacaaatctcaggttta |
6069115 |
T |
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| Q |
208 |
tcaaatttgagaatgctgtcacaatggaatggatcataccacacataaac |
257 |
Q |
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| T |
6069116 |
tcaaatttgagaatgctgtcacaatggaatggatcataccacacataaac |
6069165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 11 - 257
Target Start/End: Original strand, 6193308 - 6193551
Alignment:
| Q |
11 |
ttatactatgtcctgattctaattcaactgccttcttcaactcttctttcctttgtgaatccaattccaattccggtaaaacactctccaattcttcaac |
110 |
Q |
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| T |
6193308 |
ttatcctacgtcctgattctaattccaccgccttcttcaactcttctttcttttgtgaatccaattcc------ggcaaaacactctccaattcttgaac |
6193401 |
T |
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| Q |
111 |
acctacaagtcgtaccccgcactctttaataccaattgaaccatcaacttccc--cca-tatcgtttgtaacacagaactcaaaacaaatctcaggttta |
207 |
Q |
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| T |
6193402 |
acttactagtcgtaccccacactctttaataccaactgaaccatcaacttcccggccagtatcgtttgtaacatagaactcgaaacaaatctcgggttga |
6193501 |
T |
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| Q |
208 |
tcaaatttgagaatgctgtcacaatggaatggatcataccacacataaac |
257 |
Q |
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| T |
6193502 |
taaaatttgagaatactgtcacaatggaatggatcataccacacataaac |
6193551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 11 - 255
Target Start/End: Complemental strand, 37453672 - 37453425
Alignment:
| Q |
11 |
ttatactatgtcctgattctaattcaactgccttcttcaactcttctttcctttgtgaatccaattccaattccggtaaaacactctccaattcttcaac |
110 |
Q |
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|||| ||| |||||||||||||||| |||||||||||||| |||| |||| |||| |||||||||||||||||||| |||||| ||||||||||| |||| |
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| T |
37453672 |
ttatcctacgtcctgattctaattccactgccttcttcaaatcttttttcttttgcgaatccaattccaattccggcaaaacagtctccaattctgcaac |
37453573 |
T |
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| Q |
111 |
acctacaagtcgtaccccgcactctttaataccaattgaaccatcaacttcccc---catatcgtttgtaacacagaactcaaaacaaatctcaggttta |
207 |
Q |
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|| ||| |||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||||| |||||||||||||||| | ||||| | |
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| T |
37453572 |
acttacttgtcgtaccccacactctttaatatgaattgaactatcaacttccccagtagtatcgtttgtaacatagaactcaaaacaaattttaggttga |
37453473 |
T |
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| Q |
208 |
tcaaatttgagaatgctgtcacaatggaatggatcataccacacataa |
255 |
Q |
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| T |
37453472 |
taaaatttgagaatgctgtcacaatggaatggatcataccacacataa |
37453425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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