View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16874_high_4 (Length: 226)
Name: NF16874_high_4
Description: NF16874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16874_high_4 |
 | |
|
| [»] scaffold1192 (1 HSPs) |
| | |
|
| [»] scaffold0778 (1 HSPs) |
| | |
|
| [»] scaffold1390 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold1192 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: scaffold1192
Description:
Target: scaffold1192; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 213
Target Start/End: Original strand, 1489 - 1690
Alignment:
| Q |
12 |
gattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatgttttcaccgttcct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1489 |
gattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatgttttcaccgttcct |
1588 |
T |
|
| Q |
112 |
aacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttacaatctcagtatata |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1589 |
aacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttacaatctcagtatata |
1688 |
T |
|
| Q |
212 |
at |
213 |
Q |
| |
|
|| |
|
|
| T |
1689 |
at |
1690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 25906954 - 25906830
Alignment:
| Q |
88 |
tactgatatgttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaactt |
187 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
25906954 |
tactaatatgttttcaccgttcctaacatcattaaacacactcaaataagataaacattattgctaatctcgtatttaattaccacaagaaacaaaactt |
25906855 |
T |
|
| Q |
188 |
atcgagttacaatctcagtatataa |
212 |
Q |
| |
|
|| |||||||||||||||||||||| |
|
|
| T |
25906854 |
attgagttacaatctcagtatataa |
25906830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 207
Target Start/End: Complemental strand, 25911448 - 25911265
Alignment:
| Q |
12 |
gattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagtactgatatgttttcaccgttcct |
111 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||| ||||||||||| ||||||||| ||||| ||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25911448 |
gattattctatcatcaaacaatacctaataaacgatgtagtgtggaaaactactctattcataacaaatctaaaag------tatgttttcaacgttcct |
25911355 |
T |
|
| Q |
112 |
aacatcattaaacacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagttacaatctcagta |
207 |
Q |
| |
|
||| ||||| | |||||||| |||||||| |||| | |||| ||||||||||||| |||||||||||||||| ||||| | ||||||||| |
|
|
| T |
25911354 |
aac------aaacaaactcaaataaaataaacataattgcttatcttgtatttaattaccacaagaaacaaaacttagcgagtaatgatctcagta |
25911265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 59 - 207
Target Start/End: Complemental strand, 25892919 - 25892783
Alignment:
| Q |
59 |
aactactttattcgtaacaaatctaaaagtactgatatgttttcaccgttcctaacatcattaaacacagtcaaataagataaacatcattgttaatctc |
158 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
25892919 |
aactactctattcgtaacaaatctaaaagta------tgttttcaacgttcctaaca------aacacattcaaataagataaacatcattgcttatctc |
25892832 |
T |
|
| Q |
159 |
gtatttaattaccccaagaaacaaaacttatcgagttacaatctcagta |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| | ||||||||| |
|
|
| T |
25892831 |
gtatttaattaccacaagaaacaaaacttatcgagtaatgatctcagta |
25892783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 25907009 - 25906956
Alignment:
| Q |
12 |
gattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactact |
65 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
25907009 |
gattattctaacatcaaataatacataataaacgatgtagtgcgaaaaactact |
25906956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0778 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0778
Description:
Target: scaffold0778; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 756 - 685
Alignment:
| Q |
123 |
acacagtcaaataagataaacatcattgttaatctcgtatttaattaccccaagaaacaaaacttatcgagt |
194 |
Q |
| |
|
||||| |||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
756 |
acacactcaaataagataaacatcattgcttatcttgtatttaattaccacaagaaacaaaacttatcgagt |
685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1390 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold1390
Description:
Target: scaffold1390; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 1087 - 1164
Alignment:
| Q |
12 |
gattattctaccatcaaataatacataataaatgatgtagtgtgaaaaactactttattcgtaacaaatctaaaagta |
89 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||| ||||||||||| ||||||||| ||||||||||||| ||||||||| |
|
|
| T |
1087 |
gattattctaacatcaaacaatacctaataaacgatgtagtgtggaaaactactctattcgtaacaaaactaaaagta |
1164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University