View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16874_low_2 (Length: 433)
Name: NF16874_low_2
Description: NF16874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16874_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 19 - 426
Target Start/End: Complemental strand, 31761417 - 31761005
Alignment:
| Q |
19 |
gatatgtgcatatgagacatcaagtgtgtcagatgagctaaaaactcaagcaactcaaggcggtttaaattggtttgagctcgaatgtgtattcgataac |
118 |
Q |
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| T |
31761417 |
gatatgtgcatatgagacatcaagtgtgtcagatgagctaaaaactcaagcaactcaagctggtttaaattggtttgagctcgaatgtgtattcgataac |
31761318 |
T |
|
| Q |
119 |
aaggtttgttacttgatcgcttgtat-----tccttgtcttctgataaagtattaaatcttaacatgtgaatgttgtgtcttcaaggaagcagatggaga |
213 |
Q |
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| T |
31761317 |
aaggtttgttacttgatcgcttgtatctgattccttgtcttctgataaagtattaaatcttaacatgtgaatgttgtgtcttcaaggaagcagatggaga |
31761218 |
T |
|
| Q |
214 |
accaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagtgaatttgctgacctggttctgtttactgctggt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31761217 |
accaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagcgaatttgctgacctggttctgtttactgctggt |
31761118 |
T |
|
| Q |
314 |
gttgaaggtttgatctaaaatactatgctcttcttatgctgcatttttgtatcacggaagcgcttttctatatatttaatgatattattctctaaattct |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31761117 |
gttgaaggtttgatctaaaatactatgctcttcttatgctgcatctctgtatcacggaagcgctttcctatatatttaatgatattattctctaaattct |
31761018 |
T |
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| Q |
414 |
cacaggttctgct |
426 |
Q |
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| T |
31761017 |
cacaggttatgct |
31761005 |
T |
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Back To:
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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 194 - 324
Target Start/End: Complemental strand, 35574500 - 35574370
Alignment:
| Q |
194 |
ttcaaggaagcagatggagaaccaataatcaattatgttaccgtctttgaacgccccgggctgaaagaattcttaaagcaacttagtgaatttgctgacc |
293 |
Q |
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|||||||||| ||| ||| ||||| ||| ||||||||||| ||||||||||| || ||| |||| |||||||||| | ||||||||||||||||||||| |
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| T |
35574500 |
ttcaaggaaggagaaggaagaccaaaaattaattatgttacagtctttgaacggcctgggttgaaggaattcttaacgaaacttagtgaatttgctgacc |
35574401 |
T |
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| Q |
294 |
tggttctgtttactgctggtgttgaaggttt |
324 |
Q |
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|||| ||||||||||| ||| |||||||||| |
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| T |
35574400 |
tggtgctgtttactgcgggtcttgaaggttt |
35574370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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