View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16874_low_5 (Length: 254)
Name: NF16874_low_5
Description: NF16874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16874_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 43840006 - 43840228
Alignment:
| Q |
14 |
agatgaaggatatactaaatgagagacaagaatgtggaacattggtaaatatttacatgacccacttgaagatggtggtgaacttcatgaacaggtagag |
113 |
Q |
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| T |
43840006 |
agatgaaggatatactaaatgagagacaagaatgtggaacattggtaaatatttacatgacccacttgaagatggtggtgaacttcatgaacaggtagag |
43840105 |
T |
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| Q |
114 |
ttgtcgcttgcagaaccaaagttagaaactatgcttttgtggctggtaagaacaaggtagatgaaaatgacacagttactattagcttctaaataggact |
213 |
Q |
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| T |
43840106 |
ttgtcgcttgcagaaccaaagttagaaactatgcttttgtggctggtgagaacaaggtagatgaaaatgacacagttactattagcttctaaataggact |
43840205 |
T |
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| Q |
214 |
gatgatggtcttggcaagattct |
236 |
Q |
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| T |
43840206 |
gatgatggtcttggcaacattct |
43840228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 14 - 154
Target Start/End: Complemental strand, 29012758 - 29012618
Alignment:
| Q |
14 |
agatgaaggatatactaaatgagagacaagaatgtggaacattggtaaatatttacatgacccacttgaagatggtggtgaacttcatgaacaggtagag |
113 |
Q |
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|||| |||||||||||||||||||| |||||||| |||| ||||| || ||||||||||| |||||||||||| |||||||||||||||| |||| || |
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| T |
29012758 |
agataaaggatatactaaatgagaggaaagaatgtagaacgttggtgaacatttacatgactcacttgaagatgatggtgaacttcatgaatgggtaaag |
29012659 |
T |
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| Q |
114 |
ttgtcgcttgcagaaccaaagttagaaactatgcttttgtg |
154 |
Q |
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| T |
29012658 |
ttatcgcttgcagaaccaaagttagaagttattcttttgtg |
29012618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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