View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16874_low_7 (Length: 220)
Name: NF16874_low_7
Description: NF16874
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16874_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 5e-89; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 7 - 216
Target Start/End: Original strand, 11157271 - 11157480
Alignment:
| Q |
7 |
acatcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
106 |
Q |
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|||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11157271 |
acatcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
11157370 |
T |
|
| Q |
107 |
tagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgat |
206 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||| ||||| |
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| T |
11157371 |
tagaaattgtttgtaatttgggaggtaagaaaactccttcatatagtgcaaactctagttttggaagatggtggagatacaatctttcaagagcggtgag |
11157470 |
T |
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| Q |
207 |
gatgtccatc |
216 |
Q |
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| T |
11157471 |
ggtgtccatc |
11157480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 9 - 205
Target Start/End: Original strand, 11128282 - 11128478
Alignment:
| Q |
9 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
108 |
Q |
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||||||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11128282 |
atcatcattctctttaatatacaaatatgaaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
11128381 |
T |
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| Q |
109 |
gaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
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| T |
11128382 |
gaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggtggagatacaaaatttcaagagtggtga |
11128478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 7 - 216
Target Start/End: Complemental strand, 8864104 - 8863895
Alignment:
| Q |
7 |
acatcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaa |
106 |
Q |
| |
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|||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
8864104 |
acatcatcattatctttaatatacaaatttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatctttgttattcttacagatgtaa |
8864005 |
T |
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| Q |
107 |
tagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgat |
206 |
Q |
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|| ||||| |||| ||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| | || || ||| |||||||||||||||| |
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| T |
8864004 |
tataaattgtttgcaatttgggaggtaagaaaactccttcatatagtgcaaactcaagttttggaagatggtagaaatgcaatctttcaagagtggtgag |
8863905 |
T |
|
| Q |
207 |
gatgtccatc |
216 |
Q |
| |
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| |||||||| |
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| T |
8863904 |
ggtgtccatc |
8863895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 11146104 - 11146313
Alignment:
| Q |
9 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaacccc---attcaattaatggcggcatctttgttattctcacagatgta |
105 |
Q |
| |
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|||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
11146104 |
atcatcattatcttcaattttcaaatttgtaagagaagtaaggctttggaaacccccccattcaattaatggcggcatctttgttattctcacagatgca |
11146203 |
T |
|
| Q |
106 |
atagaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtga |
205 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||| |||| |
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| T |
11146204 |
atagaaattgtttgtaatttgggaggtaagaaaactccttcacatagtgacaactctagttttggaagatggcggagactcaaactttcaagagttgtga |
11146303 |
T |
|
| Q |
206 |
tgatgtccat |
215 |
Q |
| |
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| T |
11146304 |
gggtgtccat |
11146313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 216
Target Start/End: Complemental strand, 10892122 - 10891915
Alignment:
| Q |
9 |
atcatcattatcttcaatatacaaatttgtaagagaagtaaggctttggaaaccccattcaattaatggcggcatctttgttattctcacagatgtaata |
108 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
10892122 |
atcatcattatctttaatatacaattttgaaagataagtaaggctttggaaaccccattcaattaatggcggcatttttgttattctcacagatttaata |
10892023 |
T |
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| Q |
109 |
gaaattctttgtaatttgggaggtaagaaaactccttcacatagtgcaaactctagttttggaagatgttcgagatacaaactttcaagagtggtgatga |
208 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| || | |||| ||||| |||||||| ||||| | |
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| T |
10892022 |
gaaatggtttgtaatttgggaggtaagaaaactccttcgcatggtgcaaactctagttttggaagctgatggagactcaaacattcaagagaggtgaggg |
10891923 |
T |
|
| Q |
209 |
tgtccatc |
216 |
Q |
| |
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|||||||| |
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|
| T |
10891922 |
tgtccatc |
10891915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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