View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16875_high_1 (Length: 317)
Name: NF16875_high_1
Description: NF16875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16875_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 2 - 291
Target Start/End: Original strand, 6639559 - 6639848
Alignment:
| Q |
2 |
catcataattttcttacaatctcaccttaattattaacatcgtagaccaagcaaaaatggagacacacatctctcgttggtccatcttcgatcaagtaga |
101 |
Q |
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| T |
6639559 |
catcataattttcttacaatctcaccttaattatta-catcgtagaccaagcaaaaatggagaaacacatctctcgttggtccatcttcgatcaagtaga |
6639657 |
T |
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| Q |
102 |
tttgcgcaaaatctaattttcactattttggatatgnnnnnnncttacaaaataattgaatttccgtgcttaccgtcattcccnnnnnnngtactacata |
201 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
6639658 |
tttgcgcaaaatctaattttcactattttggatatgtttttttcttacaaaataattgaatttccgtgcttaccgtcattccctttttttgtactacata |
6639757 |
T |
|
| Q |
202 |
ttctttatc-tttaagttttaacattcttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt |
291 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6639758 |
ttctttatcttttaagttttaacattcttgaaaagcaaacatgttgaattattttctttatgttcttcaatatatattgaagtttgatgtt |
6639848 |
T |
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