View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16875_low_4 (Length: 286)
Name: NF16875_low_4
Description: NF16875
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16875_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 276
Target Start/End: Complemental strand, 38707882 - 38707625
Alignment:
| Q |
18 |
ttctcagtaaaactgatcataattgcacaagnnnnnnngacttggtgcgtgcaatatttatgtatttgtagcaacacgtctaggaaaaactcatccccta |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707882 |
ttctcagtaaaactgatcataattgcacaagaaaaaaa-acttggtgcgtgcaatatttatgtatttgtagcaacacgtctaggaaaaactcatccccta |
38707784 |
T |
|
| Q |
118 |
atgcgacaaatatacctattgatctacttagtgccgtataccannnnnnnncaatatttcacactactgtgaattaaattattcccacaaagcgtcacgc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707783 |
atgcgacaaatatacctattgatctacttagtgccgtataccattttttttcaatatttcacactactgtgaattaaattattcccacaaagcgtcacgc |
38707684 |
T |
|
| Q |
218 |
aagtaaattgtattttatttcaacatcttcataaagttgttgcaaaaaccacaggttct |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38707683 |
aagtaaattgtattttatttcaacatcttcataaagttgttgcaaaaaccacatgttct |
38707625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University