View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16876_high_1 (Length: 511)
Name: NF16876_high_1
Description: NF16876
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16876_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 4 - 502
Target Start/End: Complemental strand, 41339281 - 41338800
Alignment:
| Q |
4 |
tcagatatgttatatgtgtaattgtgatatctctgcataaaatttaaacattaaaaatatagtatgcttaattgaaccagcnnnnnnngtgaaatagaac |
103 |
Q |
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| T |
41339281 |
tcagatatgttatatgtgtaattgtgatatctctgcataaaatttaaacattaaaaatatattatgcttaattgaa-----------------atagaac |
41339199 |
T |
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| Q |
104 |
atttgcaggtgaaagaagggtgaaaaatatcaacctcatggtaagcaaatgggtttggcatggaagttccgatgcctccactaaatatgggaggtgaata |
203 |
Q |
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| T |
41339198 |
atttgcaggtgaaagaagggtgaaaaatattaacctcatggtaagcaaatgggtttggcatgaaagttccgatgcctccactaaatatgggaagtgaata |
41339099 |
T |
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| Q |
204 |
aggaatgcattggtttatgttgctgtgcaaatcagaagtaaatggtggtggcatacgaggaactgtgggaggcacaacgttctcagaacctgaaggtctc |
303 |
Q |
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| T |
41339098 |
aggaatgcattggtttatgttgctgtgcaaatcagaagtaaatggtggtggcatacgaggaactgtgggaggcacaacgttctcagaacctgaaggtctc |
41338999 |
T |
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| Q |
304 |
caactccaataaaatggtgctcggaaatctattgaatgtaaaataggggtgggatgatagaaaagctcctctaatcgtccattctcacaataccgtccat |
403 |
Q |
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| T |
41338998 |
caactccaataaaatggtgctcggaaatctattgaatgtaaaatagggggaggatgatagaaaagctcctctaatcgtccattctcacaataccgtccat |
41338899 |
T |
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| Q |
404 |
acagaagattcttccaatagctttcaaaatcaccatataaaatatcataaaagtggttcaaaaaataatgcgaatcttcaacatggctaatattctcat |
502 |
Q |
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| T |
41338898 |
acagaagattcttccaatagctttcaaaatcaccatataaaatatcataaaagtggttcaaaaaataatgcgaatcttcaacatggctaatattctcat |
41338800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 22629724 - 22629677
Alignment:
| Q |
31 |
tatctctgcataaaatttaaacattaaaaatatagtatgcttaattgaa |
79 |
Q |
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| T |
22629724 |
tatctctgcataaaatttaaacatt-aaaatatattatgcttaattgaa |
22629677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 303
Target Start/End: Complemental strand, 22629525 - 22629455
Alignment:
| Q |
233 |
aatcagaagtaaatggtggtggcatacgaggaactgtgggaggcacaacgttctcagaacctgaaggtctc |
303 |
Q |
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| T |
22629525 |
aatcagaagaaaattttgttggaatactatgaactgcgggaggcacaacgttctcaaaacctgaaggtctc |
22629455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 22630400 - 22630454
Alignment:
| Q |
30 |
atatctctgcataaaatttaaacattaaaaatatagtatgcttaattgaaccagc |
84 |
Q |
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| T |
22630400 |
atatctctgcataaaatttaaacatttacaatatattacgcttaattgaatcagc |
22630454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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